YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC144.16
Organism:	Schizosaccharomyces pombe
Length:	179 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC144.16.

Description	E-value	Query Range	Subject Range
gi\|42553407, gi\|... - gi\|46134941\|ref\|XP_389495.1\| hypothetical protein FG09319.1 [Gibberella zeae PH-1], gi\|42553407\|gb\|E...	235.0	[0..3]	[178..2]
gi\|49087143, gi\|... - gi\|67521900\|ref\|XP_659011.1\| hypothetical protein AN1407.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	231.0	[0..1]	[179..1]
gi\|83775378 - gi\|83775378\|dbj\|BAE65498.1\| unnamed protein product [Aspergillus oryzae] gi\|169784340 - gi\|169784340\|ref\|XP_001826631.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|220688982, gi... - gi\|238508543\|ref\|XP_002385463.1\| cytoplasmic protein required for cell viability, putative [Aspergil...	227.0	[0..1]	[178..1]
gi\|28927516, gi\|... - gi\|38567132\|emb\|CAE76427.1\| conserved hypothetical protein [Neurospora crassa], gi\|32422657\|ref\|XP_3... gi\|85119738 - gi\|85119738\|ref\|XP_965704.1\| hypothetical protein NCU02573 [Neurospora crassa OR74A]	226.0	[0..3]	[179..4]
gi\|113565303, gi... - gi\|115460264\|ref\|NP_001053732.1\| Os04g0595200 [Oryza sativa (japonica cultivar-group)], gi\|113565303...	225.0	[0..1]	[176..1]
gi\|115490937, gi... - gi\|115490937\|ref\|XP_001210096.1\| protein FAM96B [Aspergillus terreus NIH2624], gi\|114196956\|gb\|EAU38...	224.0	[0..1]	[178..1]
gi\|70983356, gi\|... - gi\|70983356\|ref\|XP_747205.1\| cytoplasmic protein required for cell viability [Aspergillus fumigatus ... gi\|159123791 - gi\|159123791\|gb\|EDP48910.1\| cytoplasmic protein required for cell viability, putative [Aspergillus f...	223.0	[0..1]	[178..1]
gi\|45201439, gi\|... - gi\|45201439\|ref\|NP_987009.1\| AGR343Wp [Ashbya gossypii ATCC 10895], gi\|44986373\|gb\|AAS54833.1\| AGR34... gi\|44986373 - gi\|44986373\|gb\|AAS54833.1\| AGR343Wp [Ashbya gossypii ATCC 10895]	223.0	[0..3]	[178..25]
gi\|50546853, gi\|... - gi\|50546853\|ref\|XP_500896.1\| YALI0B14707p [Yarrowia lipolytica], gi\|49646762\|emb\|CAG83147.1\| unnamed... gi\|49646762 - gi\|49646762\|emb\|CAG83147.1\| YALI0B14707p [Yarrowia lipolytica]	221.0	[0..3]	[178..2]
gi\|134089782, gi... - gi\|50257302\|gb\|EAL20011.1\| hypothetical protein CNBF3380 [Cryptococcus neoformans var. neoformans B-... gi\|57227794, gi\|... - gi\|58268806\|ref\|XP_571559.1\| transcription-related protein [Cryptococcus neoformans var. neoformans ...	218.0	[0..1]	[177..1]

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Predicted Domain #1

Region A:
Residues: [1-179]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSANLQNENP EVKELNQLPS RVEEEEDLLL SSTKQWLTEI ESEQTNIKEE RDPIDPQEIY  60
   61 DLLAKINDPE HPLTLAQLSV VKLEDIEVVD NVEGDSYITV HITPTIPHCS MCTLIGLCIR 120
  121 VRLERCLPPR FHVDVKVKKG THASESQVNK QLNDKERVAA ACENEQLLSV LNGMMATCV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	3.61
Match:	1uwdA
Description:	Conserved Hypothetical Protein TM0487 from Thermotoga maritima
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.7754423394137	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: