YRC Public Data Repository - Protein Structure Prediction

Protein:	mis15
Organism:	Schizosaccharomyces pombe
Length:	411 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mis15.

Description	E-value	Query Range	Subject Range
gi\|2257505 - gi\|2257505\|dbj\|BAA21401.1\| pi022 [Schizosaccharomyces pombe]	516.0	[0..54]	[411..1]
CHL4_YEAST - Central kinetochore subunit CHL4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=CHL4 PE... CHL4 - Outer kinetochore protein required for chromosome stability, interacts with kinetochore proteins Ctf...	440.0	[0..4]	[406..6]
gi\|49094072, gi\|... - gi\|67528324\|ref\|XP_661964.1\| hypothetical protein AN4360.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	436.0	[0..3]	[399..13]
gi\|68487857, gi\|... - gi\|68487857\|ref\|XP_712209.1\| hypothetical protein CaO19.14141 [Candida albicans SC5314], gi\|68487796... orf19.14141, orf... - CHL4 CGDID:CAL0005791 Assembly 19, Contig19-10256 (26994, 25597) CDS, reverse complemented, translat...	432.0	[0..5]	[398..15]
gi\|44985544, gi\|... - gi\|45200846\|ref\|NP_986416.1\| AGL251Cp [Ashbya gossypii ATCC 10895], gi\|44985544\|gb\|AAS54240.1\| AGL25... gi\|44985544 - gi\|44985544\|gb\|AAS54240.1\| AGL251Cp [Ashbya gossypii ATCC 10895]	430.0	[0..7]	[400..5]
gi\|46121587, gi\|... - gi\|46121587\|ref\|XP_385348.1\| hypothetical protein FG05172.1 [Gibberella zeae PH-1], gi\|42551613\|gb\|E...	381.0	[0..2]	[367..9]
gi\|11359690 - gi\|11359690\|pir\|\|T51071 related to trfA protein [imported] - Neurospora crassa	347.0	[0..3]	[326..141]
gi\|159124914 - gi\|159124914\|gb\|EDP50031.1\| CHL4 family chromosome segregation protein, putative [Aspergillus fumiga... gi\|66849806, gi\|... - gi\|70994790\|ref\|XP_752172.1\| CHL4 family chromosome segregation protein [Aspergillus fumigatus Af293...	345.0	[0..3]	[396..13]
gi\|39978227, gi\|... - gi\|39978227\|ref\|XP_370501.1\| hypothetical protein MG06998.4 [Magnaporthe grisea 70-15], gb\|EAA55341....	332.0	[0..71]	[357..23]

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Predicted Domain #1

Region A:
Residues: [1-129]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTELSSNIR IKHDKKIQKL LNRFPRDFLV KLCVEWIQKQ TYPPNAKDIN LEDMLDDEEW  60
   61 NPEAFYKNVP KSMLKRSIIH RMLVYDWPNG FYLGQIAQLE ILALAHGFVS MRWTASKVHH 120
  121 SAEKTVLPN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [130-411]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLVFLELLKS ELESIFVYVR EQRNIIMEIF ANRFNSTHIS PGMKHYLLLL SVSFYGIQND  60
   61 PLLCTRTHLP SKYFTSVSWM TQMFYYTTYF YEMILKAGSA LRPIDLVSKN LTTFCTNVGV 120
  121 NKEANALGAW QIYAKNLVDR SPLDTRPILS DDNSSLIADS TQNCEKHREM AIQRRFGDTH 180
  181 SQVLDKLLIT LDHDYIEKST EKDKVLEENV ESYNPTEQRP LVVMQLRGQH ILEGLKDICR 240
  241 QDALDPFTMP SYLTGETGLS ILYVRDGLVL QRQESLGQQE IN

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits