YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC359.03c
Organism:	Schizosaccharomyces pombe
Length:	579 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC359.03c.

Description	E-value	Query Range	Subject Range
YI0B_SCHPO - Uncharacterized amino-acid permease C869.11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G... SPAC869.11 - amino acid permease, unknown 6	343.0	[0..6]	[579..9]
SPBC359.01 - amino acid permease, unknown 7 YH81_SCHPO - Uncharacterized amino-acid permease C359.01 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) G...	342.0	[0..1]	[579..1]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	330.0	[0..5]	[579..82]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	329.0	[0..50]	[579..55]
gi\|42547995, gi\|... - gi\|46115914\|ref\|XP_383975.1\| hypothetical protein FG03799.1 [Gibberella zeae PH-1], gi\|42547995\|gb\|E...	329.0	[0..2]	[579..32]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	329.0	[0..52]	[579..68]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	325.0	[0..69]	[579..138]

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Predicted Domain #1

Region A:
Residues: [1-579]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKDYDFDI ESVLPEEKAP QVSEAKKDYI SQESTVLSGQ VDFVEPEHKG FFQNLIDGFK  60
   61 PAREADGNGG PALKRGLSTR HMQLMSIGGA IGSGLYVGSG SALADGGPAS VIINYILIGI 120
  121 MMFFVIYALG EMAVAYPVAG SFNTYATRFI DPAWGFAVSW NYFFNYFVTF PFELTTCAIT 180
  181 FTFWTDVNCA VWISIFLVVV IGINLFGVRV FGEVEFVLAL IKVVATVGFI ILAIIINCGG 240
  241 VPTDHRGYIG GSIIKQKPFR HGFKGFCSVY TTAAFSFSGT EIVGLAAAEV GDPRKTLPGA 300
  301 VKQVFWRVAI FYIVSLILIG LLISPDDPKL MGNGSASVSP FVLAIQEANI KGLPSVFNAV 360
  361 IIISVISVTN SSTYTAGRTL HGMANLKQAP AFFKYTDRLG RPLIAMIVVL SFGFFAYINE 420
  421 ANNNGNDISD TVFDWLLAIS GLSNFFTWGS ICLSHIMFRL AFKKQGHSLK ELGFVSPMGI 480
  481 WGSVIGLGFN ILCLMAEFYV SLFPIGGSPN ANDFFQGYLA ACITLVFFIG YKIYDRSHIP 540
  541 SLDKLDITTG LKTYEYEETK DSSDTGRFRF FKKIINTVC

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.67
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits