YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC8D2.02c
Organism:	Schizosaccharomyces pombe
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC8D2.02c.

Description	E-value	Query Range	Subject Range
gi\|111070228 - gi\|111070228\|gb\|EAT91348.1\| hypothetical protein SNOG_01699 [Phaeosphaeria nodorum SN15]	208.0	[0..2]	[170..33]
gi\|49098591, gi\|... - gi\|67540748\|ref\|XP_664148.1\| hypothetical protein AN6544.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	204.0	[0..5]	[170..5]
gi\|145014688, gi... - gi\|39943920\|ref\|XP_361497.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA50212....	202.0	[0..5]	[170..3]
gi\|169776979 - gi\|169776979\|ref\|XP_001822955.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771692 - gi\|83771692\|dbj\|BAE61822.1\| unnamed protein product [Aspergillus oryzae]	201.0	[0..1]	[170..1]
gi\|115386232, gi... - gi\|115386232\|ref\|XP_001209657.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	200.0	[0..1]	[170..1]
gi\|44982465 - gi\|44982465\|gb\|AAS51751.1\| ADL169Wp [Ashbya gossypii ATCC 10895] gi\|44982465, gi\|... - gi\|45187704\|ref\|NP_983927.1\| ADL169Wp [Ashbya gossypii ATCC 10895], gi\|44982465\|gb\|AAS51751.1\| ADL16...	191.0	[0..5]	[170..5]
VPS68 - Vacuolar membrane protein of unknown function involved in vacuolar protein sorting; also detected in... gi\|151945506 - gi\|151945506\|gb\|EDN63747.1\| vacuolar sorting protein [Saccharomyces cerevisiae YJM789] gi\|207341476 - gi\|207341476\|gb\|EDZ69524.1\| YOL129Wp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190407223 - gi\|190407223\|gb\|EDV10490.1\| vacuolar protein sorting protein 68 [Saccharomyces cerevisiae RM11-1a] VPS68_YEAST - Vacuolar protein sorting-associated protein 68 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S28...	189.0	[0..7]	[170..8]
orf19.3458 - orf19.3458 CGDID:CAL0005014 Assembly 19, Contig19-10177 (8701, 9246) CDS, translated using codon tab... gi\|68487230, gi\|... - gi\|68487230\|ref\|XP_712498.1\| hypothetical protein CaO19.3458 [Candida albicans SC5314], gi\|46433890\|...	189.0	[0..6]	[170..7]
gi\|32405830, gi\|... - gi\|32405830\|ref\|XP_323528.1\| hypothetical protein [Neurospora crassa], gi\|28922688\|gb\|EAA31912.1\| pr... gi\|85101432 - gi\|85101432\|ref\|XP_961148.1\| hypothetical protein NCU04188 [Neurospora crassa OR74A]	188.0	[0..5]	[170..3]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLLDSSIFR FRLSSLHVSS RSLGVYFAGI MFASAVWVFV DAALYSAFDY ARNLHITFID  60
   61 WIPFLCSILG IVIVNSIDKS RLSGDSFAYT DESLARKARF ILFIGFALLA GGLGGSFTVF 120
  121 ILKYVVAGYE GKSLLMGSAN IISNILFMIS ATALWITGNM NDDYHYNLQL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	104.721246
Match:	PF05255.2
Description:	No description for PF05255.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits