YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC9.10
Organism:	Schizosaccharomyces pombe
Length:	591 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC9.10.

Description	E-value	Query Range	Subject Range
LYP1_YEAST - Lysine-specific permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=LYP1 PE=1 SV=2 LYP1 - Lysine permease; one of three amino acid permeases (Alp1p, Can1p, Lyp1p) responsible for uptake of c... gi\|190409237 - gi\|190409237\|gb\|EDV12502.1\| lysine permease [Saccharomyces cerevisiae RM11-1a]	288.0	[0..1]	[584..28]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	286.0	[0..33]	[588..6]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	284.0	[0..3]	[589..36]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	281.0	[0..8]	[589..78]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	280.0	[0..2]	[588..1022]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	278.0	[0..15]	[583..18]
gi\|49647803, gi\|... - gi\|50548931\|ref\|XP_501936.1\| YALI0C17237p [Yarrowia lipolytica], gi\|49647803\|emb\|CAG82256.1\| unnamed... gi\|49647803 - gi\|49647803\|emb\|CAG82256.1\| YALI0C17237p [Yarrowia lipolytica]	277.0	[0..71]	[586..104]

Back

Predicted Domain #1

Region A:
Residues: [1-68]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSQISHQD PELGQTSSGS SSIKEKAEPQ LYAGPIDPAR RPDVFQEGFE DVSVTDDDND  60
   61 NELLRKMG

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	4hb1A
Description:	A DESIGNED FOUR HELIX BUNDLE PROTEIN.
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [69-591]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YQPVLHRSFE FFESFAASFA SLDVVSGVRL TFSWGISFGG PAAYWSAMLV TGFCSIVTAA  60
   61 CLAEICSALP AAGSIYLWAA ESAGPRFGRF VSFLVAWWST TAWTTFVASI TQSTANFIFA 120
  121 EVSTFNNPWP TNDSDVKFRA VQWIVAEVLL VFTILLNQVP PRYYKWIFKA SMLLMFIDYV 180
  181 MNIIWVPVAT SKKPDGFRSA KWVFTETIYD QAGYIKEVDD ANGNPIASLS KIVPKGWQWC 240
  241 LSYFATAGVI VGYDASGHIA EETKDASIKA ARGIFYSTVT SFIVAFSLAI LYLFCCPDLD 300
  301 TFTAILYNDN SPQPFVNFYS YLLGRGGHVV MNVVIILEIF LNGVVSVLAC SRLVFAVSRD 360
  361 GVLPFSNWIS QVSKTGQPKN AITVIYIVSA LLLCTILPSA VAFTSLVSAA GAPSFAAYAV 420
  421 LAFCRLFITR DKFPKGRWSL GWLSKPCLVI TLVYNLFALV VNVSPYTYPV TGPSFNYAVV 480
  481 IMGGVSIFAI ICTIVIPKSR WVANRYRYES DSEHSASVKE LKV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.44
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits