YRC Public Data Repository - Protein Structure Prediction

Protein:	grx5
Organism:	Schizosaccharomyces pombe
Length:	146 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for grx5.

Description	E-value	Query Range	Subject Range
gi\|67528196, gi\|... - gi\|67528196\|ref\|XP_661908.1\| hypothetical protein AN4304.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	149.0	[0..2]	[133..13]
gi\|46433069, gi\|... - gi\|68488848\|ref\|XP_711724.1\| potential mitochondrial glutaredoxin [Candida albicans SC5314], gi\|6848... orf19.10298, orf... - orf19.2782 CGDID:CAL0004286 Assembly 19, Contig19-10159 (12538, 12011) CDS, reverse complemented, tr...	149.0	[0..16]	[145..34]
gi\|119188369, gi... - gi\|90303577\|gb\|EAS33208.1\| conserved hypothetical protein [Coccidioides immitis RS], gi\|119188369\|re...	148.0	[0..2]	[139..15]
gi\|85099869 - gi\|85099869\|ref\|XP_960860.1\| monothiol glutaredoxin-5, mitochondrial precursor [Neurospora crassa OR... gi\|32405650, gi\|... - gi\|32405650\|ref\|XP_323438.1\| hypothetical protein [Neurospora crassa], gi\|28950367\|emb\|CAD71022.1\| p...	147.0	[0..1]	[146..25]
GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida (strain Pm70) GN=grxD PE=3 SV=1 GLRX4_PASMU - Glutaredoxin-4 OS=Pasteurella multocida GN=grxD PE=3 SV=1	143.0	[0..23]	[134..1]
gi\|114191669, gi... - gi\|115400829\|ref\|XP_001216003.1\| monothiol glutaredoxin-5, mitochondrial precursor [Aspergillus terr...	141.0	[0..19]	[132..419]
gi\|42549338, gi\|... - gi\|46117450\|ref\|XP_384743.1\| hypothetical protein FG04567.1 [Gibberella zeae PH-1], gi\|42549338\|gb\|E...	140.0	[0..3]	[139..24]
gi\|44982710 - gi\|44982710\|gb\|AAS51973.1\| ADR053Wp [Ashbya gossypii ATCC 10895] gi\|45187926, gi\|... - gi\|45187926\|ref\|NP_984149.1\| ADR053Wp [Ashbya gossypii ATCC 10895], gi\|44982710\|gb\|AAS51973.1\| ADR05...	140.0	[0..3]	[135..8]
gi\|22294596, gi\|... - gi\|22298417\|ref\|NP_681664.1\| hypothetical protein tll0874 [Thermosynechococcus elongatus BP-1], gi\|2...	140.0	[0..13]	[129..7]
gi\|32030017, gi\|... - gi\|32030017\|ref\|ZP_00132945.1\| COG0278: Glutaredoxin-related protein [Haemophilus somnus 2336], gi\|1...	140.0	[0..23]	[133..1]

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Predicted Domain #1

Region A:
Residues: [1-146]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSMFRFWIP KTSISMQLRM LSTQTRQALE QAVKEDPIVL FMKGTPTRPM CGFSLKAIQI  60
   61 LSLENVASDK LVTYNVLSND ELREGIKEFS DWPTIPQLYI NGEFVGGSDI LASMHKSGEL 120
  121 HKILKEINAL APEQPKDSEE ETTKKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.30103
Match:	1ykaA
Description:	Solution structure of Grx4, a monothiol glutaredoxin from E. coli.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits