YRC Public Data Repository - Protein Structure Prediction

Protein:	alg9
Organism:	Schizosaccharomyces pombe
Length:	577 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for alg9.

Description	E-value	Query Range	Subject Range
gi\|40746215, gi\|... - gi\|67516895\|ref\|XP_658333.1\| hypothetical protein AN0729.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	470.0	[0..10]	[565..29]
gi\|109108612 - gi\|109108612\|ref\|XP_001106108.1\| PREDICTED: disrupted in bipolar disorder 1 isoform 2 [Macaca mulatt...	470.0	[0..10]	[563..54]
ALG9_MOUSE - Alpha-1,2-mannosyltransferase ALG9 OS=Mus musculus GN=Alg9 PE=2 SV=1	466.0	[0..10]	[563..54]
ALG9 - asparagine-linked glycosylation 9, alpha-1,2-mannosyltransferase homolog (S. cerevisiae)	465.0	[0..10]	[563..54]
gi\|73954786 - gi\|73954786\|ref\|XP_862316.1\| PREDICTED: similar to disrupted in bipolar disorder 1 isoform 3 [Canis ...	465.0	[0..10]	[563..54]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSKAPRKSL SVSFVWTFSI LAVLRLTSAS FRVIDDCDEV YNYWEPLHYL LYGYGLQTWE  60
   61 YSPEYAIRSW FYIALHAVPG FLARGLGLSR LHVFYFIRGV LACFSAFCET NLILAVARNF 120
  121 NRAVALHLTS VLFVNSGMWS ASTSFLPSSF AMNMVTLALS AQLSPPSTKR TVKVVSFITI 180
  181 GAVIGWPFSA ALSIPFILLE LVDLKGRFRH LFCRWFKAIF VALLITGICI TVDSLFYHRI 240
  241 QF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [243-494]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAWNIVKYNV LAKDGRGPDI YGTEPWWYYF ANLSLQHNIV LWFAMACGPL VLLAAFTNWI  60
   61 NLDSFLDLSS VISPFYIWLF IFIIQPHKEE RFMYPIYPVL CLAAAIGLDM SLKLMIQILS 120
  121 SINETVRSKF PVRFVVLCVY AIIGCLSIAR ILAIQNYNAP MIIYPAISFL ETDNNVTTNV 180
  181 CVGKEWYRYP STFFLPDNSR LKFVKSEFDG ILPGEFVESN STWWNREGYY QIPEHMNEFN 240
  241 NEEPTRYTSL ES

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [495-577]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CDFLIDLEFD HSKATVNEPI YSKSDGWIPV MVYPFIDTKQ TPFMGRAFAV PFIEPKWGRY  60
   61 EILVKKPVKI DFSNLRRASK QQA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.876	N/A	N/A	d.58.53	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits