YRC Public Data Repository - Protein Structure Prediction

Protein:	rpl44
Organism:	Schizosaccharomyces pombe
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rpl44.

Description	E-value	Query Range	Subject Range
gi\|49099270, gi\|... - gi\|67540884\|ref\|XP_664216.1\| hypothetical protein AN6612.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	167.0	[0..4]	[134..3]
gi\|90297938, gi\|... - gi\|90297938\|gb\|EAS27569.1\| hypothetical protein CIMG_10174 [Coccidioides immitis RS], gi\|119173385\|r...	164.0	[0..4]	[134..3]
gi\|45188222, gi\|... - gi\|45188222\|ref\|NP_984445.1\| ADR349Wp [Ashbya gossypii ATCC 10895], gi\|44983066\|gb\|AAS52269.1\| ADR34... gi\|44983066 - gi\|44983066\|gb\|AAS52269.1\| ADR349Wp [Ashbya gossypii ATCC 10895]	164.0	[0..3]	[134..22]
gi\|115386392, gi... - gi\|115386392\|ref\|XP_001209737.1\| protein MAK16 [Aspergillus terreus NIH2624], gi\|114190735\|gb\|EAU324...	163.0	[0..4]	[134..3]
gi\|169777121 - gi\|169777121\|ref\|XP_001823026.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83771763 - gi\|83771763\|dbj\|BAE61893.1\| unnamed protein product [Aspergillus oryzae] gi\|220694999, gi... - gi\|238494226\|ref\|XP_002378349.1\| ribosomal large subunit biogenesis protein MAK16, putative [Aspergi...	163.0	[0..4]	[134..3]
gi\|73947458 - gi\|73947458\|ref\|XP_533581.2\| PREDICTED: similar to ribosomal protein L28 [Canis familiaris]	162.0	[0..2]	[130..122]
gi\|159122439 - gi\|159122439\|gb\|EDP47560.1\| ribosomal large subunit biogenesis protein MAK16, putative [Aspergillus ... gi\|66845279, gi\|... - gi\|70984272\|ref\|XP_747652.1\| ribosomal large subunit biogenesis protein MAK16 [Aspergillus fumigatus...	160.0	[0..4]	[134..3]
gi\|38103633, gi\|... - gi\|39944116\|ref\|XP_361595.1\| hypothetical protein MGG_04069 [Magnaporthe grisea 70-15], gb\|EAA50310....	158.0	[0..4]	[134..3]
gi\|50935731, gi\|... - gi\|50935731\|ref\|XP_477393.1\| putative RNA binding protein [Oryza sativa (japonica cultivar-group)], ...	155.0	[0..3]	[133..1]
gi\|49078514, gi\|... - gi\|71022609\|ref\|XP_761534.1\| hypothetical protein UM05387.1 [Ustilago maydis 521], ref\|XP_403002.1\| ...	155.0	[0..4]	[133..3]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSVSNDLIWQ VIRDNNRFLV KRPEFGGIQF NREPVNVSGK NAQRFSGLCN DKAVGVQANS  60
   61 PRGVVLITKT NPKNAQKPAK LFRKDVIANA SSRKTYKSIA GRIGRTGYRD DLVKVSVARA 120
  121 SAILSSQRPK KTVA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	81.187087
Match:	PF01778.8
Description:	No description for PF01778.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits