YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC2C4.05
Organism:	Schizosaccharomyces pombe
Length:	134 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC2C4.05.

Description	E-value	Query Range	Subject Range
gi\|111071090 - gi\|111071090\|gb\|EAT92210.1\| hypothetical protein SNOG_00715 [Phaeosphaeria nodorum SN15]	175.0	[0..2]	[134..3]
gi\|46109032, gi\|... - gi\|46109032\|ref\|XP_381574.1\| hypothetical protein FG01398.1 [Gibberella zeae PH-1], gi\|42546131\|gb\|E...	175.0	[0..2]	[134..4]
gi\|67538050, gi\|... - gi\|67538050\|ref\|XP_662799.1\| hypothetical protein AN5195.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	173.0	[0..2]	[134..3]
gi\|109105438 - gi\|109105438\|ref\|XP_001118044.1\| PREDICTED: similar to cornichon homolog 2 [Macaca mulatta]	173.0	[0..12]	[132..147]
gi\|114193806, gi... - gi\|115390755\|ref\|XP_001212882.1\| ER-derived vesicles protein ERV14 [Aspergillus terreus NIH2624], gi...	173.0	[0..2]	[134..3]
ORFP:8545 - YGL054C, Contig c21 658-1074 gi\|151943750 - gi\|151943750\|gb\|EDN62060.1\| ER vesicle protein [Saccharomyces cerevisiae YJM789] gi\|190407014 - gi\|190407014\|gb\|EDV10281.1\| 14 kDa protein found on ER-derived vesicles [Saccharomyces cerevisiae RM... ERV14 - Protein localized to COPII-coated vesicles, involved in vesicle formation and incorporation of speci... ERV14_YEAST - ER-derived vesicles protein ERV14 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ERV14 ...	166.0	[0..2]	[134..1]
gi\|134110201, gi... - gi\|50258983\|gb\|EAL21664.1\| hypothetical protein CNBC7000 [Cryptococcus neoformans var. neoformans B-...	165.0	[0..2]	[134..3]
gi\|74181821 - gi\|74181821\|dbj\|BAE32615.1\| unnamed protein product [Mus musculus]	164.0	[0..3]	[132..6]
gi\|38111609, gi\|... - gi\|39946024\|ref\|XP_362549.1\| hypothetical protein MGG_08132 [Magnaporthe grisea 70-15], gb\|EAA57163....	164.0	[0..2]	[134..3]
CNIH4_ARATH - Protein cornichon homolog 4 OS=Arabidopsis thaliana GN=At1g12390 PE=1 SV=1	163.0	[0..1]	[134..1]

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Predicted Domain #1

Region A:
Residues: [1-134]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSAWIYFTS LMLTCANIML QMYFTVMYSD LKDDFINPID LSRKLNWYVL PEMGFQAFSA  60
   61 LLLLLSGAWI TFLLNVPMLA WNAKMIMSNT HMHDSTTIFK DVSSRQKRSF FKLACFAVFF 120
  121 FVYLFLFVSR LVDE

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	77.337242
Match:	PF03311.5
Description:	No description for PF03311.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits