YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1A6.01c
Organism:	Schizosaccharomyces pombe
Length:	455 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1A6.01c.

Description	E-value	Query Range	Subject Range
gi\|42547694, gi\|... - gi\|46111161\|ref\|XP_382638.1\| hypothetical protein FG02462.1 [Gibberella zeae PH-1], gi\|42547694\|gb\|E...	436.0	[0..5]	[448..2]
gi\|40741046, gi\|... - gi\|67903400\|ref\|XP_681956.1\| hypothetical protein AN8687.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	418.0	[0..5]	[448..2]
gi\|85091868 - gi\|85091868\|ref\|XP_959112.1\| hypothetical protein NCU04855 [Neurospora crassa OR74A] gi\|28920512, gi\|... - gi\|32407254\|ref\|XP_324212.1\| hypothetical protein [Neurospora crassa], gi\|28920512\|gb\|EAA29876.1\| co...	417.0	[0..5]	[448..2]
TRIP4_MOUSE, TRI... - Activating signal cointegrator 1 OS=Mus musculus GN=Trip4 PE=1 SV=1, (Q9QXN3) Activating signal coin...	373.0	[0..4]	[449..15]
gi\|114657598 - gi\|114657598\|ref\|XP_001174255.1\| PREDICTED: thyroid hormone receptor interactor 4 isoform 2 [Pan tro...	373.0	[0..4]	[389..15]
gi\|38104840, gi\|... - gi\|39960266\|ref\|XP_364560.1\| hypothetical protein MG09366.4 [Magnaporthe grisea 70-15], gb\|EAA51349....	372.0	[0..8]	[391..5]

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Predicted Domain #1

Region A:
Residues: [1-286]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEKWTKENVL KILPVDDESA AMITSTALAV DSSEAAKDYW ISLLGDSAET IEFISDFNQK  60
   61 RFHSTHSGNS PSIMKNKKNV TPNNNIRQKN TATSSHPSFY IANNKQKGYD EEMYKVNPAS 120
  121 RNKSQSNNIS SHEKSSKTTK NVSPGVMTSD LIPEKKSVKH NNSSSNRIEG LADIEKAIRQ 180
  181 IEISQNINKA ERRVCNCQGR KHPLNEAAPN CLNCGKIICI VEGIGPCTFC DNPVISKAQQ 240
  241 LELIQELKHE GSRLKQAANQ KRKSKTVSSK NNFQRLQNSS LHSIFL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1dvpA
Description:	Hrs
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.823081305272688	bayes_pls_golite062009
protein binding	0.12136520713995	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [287-455]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DPKQLEQKAQ EAEERKNVLL NFDRTSAQRT RIIDEAADFD PTSLASDTWA SPAEKALNLV  60
   61 RMQKAMAKKE KKKKKVLSIS LSGKKVVVDQ KEASSESSDE DQDELDNLTK VEGQSHSHNP 120
  121 KAPVIRNLPR PIYHQDLHSS HVAVPESILN KINQKWSKVQ DDDGMPSML

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: