YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11G7.01
Organism:	Schizosaccharomyces pombe
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11G7.01.

Description	E-value	Query Range	Subject Range
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	223.0	[0..3]	[533..1082]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	200.0	[0..3]	[534..200]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	181.0	[0..3]	[527..601]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	175.0	[0..2]	[524..468]
MUC17 - mucin 17, cell surface associated	170.0	[0..1]	[534..1409]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	168.0	[0..19]	[535..1368]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTNNTSSV DTSLSSSASS SIPASSSSAA ASTSLSSSSV IPSSSSSMLS SSSATAISSS  60
   61 SSSSPLSSSS FTSPASSSFI TSLVSSSSQQ SSSSSASLTS SSSATLTSSS SASPTSSSSS 120
  121 HALSSSSSSL VASSSSSGMS SSSLSHSSSV PSSSSSYHSS SMTTSGLSSS ASIVSSTYRD 180
  181 GPSIITLVST SYVSEVVTPT TTNNWNSSSS FTSSTSSTPI SSSYSSSGTL PS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSNKSSNHVG VVVGCSVAIP VGVVLILIGL GIFLWKRHQR SKRIKAERMQ EVEEYGFNPN  60
   61 QPSNFRSPNR APSTNNRYRG WNGSPTPAAG NNTNGRPVAP RPSAGAGGAN P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.239	N/A	N/A	d.75.2	DNA repair protein MutS, domain I

Predicted Domain #3

Region A:
Residues: [344-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAASQPGLLG GSSNSAGPIA AATAAGVGAD ASDAANTGGS FTRPQGARMV RPIGNPPDLS  60
   61 ASNEAEATMP PSNGSNFSEG LSASPFESGP AVGAAGAAAE AAEHSGSGSD SYPEGPLATI 120
  121 PESDSESMAS DLAGESSYGS RAALSSRSQS NLLSPTSTGA SNQPNYSPFA DNPSSSNVSI 180
  181 PRSSSEARRL NLF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1p9hA
Description:	CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits