YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC11G7.01
Organism:	Schizosaccharomyces pombe
Length:	536 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC11G7.01.

Description	E-value	Query Range	Subject Range
gi\|39592304, gi\|... - gi\|39592304\|emb\|CAE75525.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae], gi\|187020927\|em... gi\|157762282 - gi\|157762282\|ref\|XP_001673483.1\| Hypothetical protein CBG23547 [Caenorhabditis briggsae AF16]	223.0	[0..3]	[533..1082]
gi\|33310026 - gi\|33310026\|gb\|AAQ03243.1\|AF414112_1 putative cell wall protein FLO11p [Candida albicans] gi\|68482880, gi\|... - gi\|68482880\|ref\|XP_714666.1\| putative cell wall adhesin [Candida albicans SC5314], gi\|46436253\|gb\|EA...	200.0	[0..3]	[534..200]
TCNA_TRYCR - Sialidase OS=Trypanosoma cruzi GN=TCNA PE=2 SV=1	181.0	[0..3]	[527..601]
gi\|31540577 - gi\|31540577\|gb\|AAP48996.1\| cellulosomal scaffoldin anchoring protein C; ScaC [Acetivibrio cellulolyt...	175.0	[0..2]	[524..468]
MUC17 - mucin 17, cell surface associated	170.0	[0..1]	[534..1409]
SLAP1_CLOTH - Cell surface glycoprotein 1 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237 / NBRC 103400 ...	168.0	[0..19]	[535..1368]

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Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFTNNTSSV DTSLSSSASS SIPASSSSAA ASTSLSSSSV IPSSSSSMLS SSSATAISSS  60
   61 SSSSPLSSSS FTSPASSSFI TSLVSSSSQQ SSSSSASLTS SSSATLTSSS SASPTSSSSS 120
  121 HALSSSSSSL VASSSSSGMS SSSLSHSSSV PSSSSSYHSS SMTTSGLSSS ASIVSSTYRD 180
  181 GPSIITLVST SYVSEVVTPT TTNNWNSSSS FTSSTSSTPI SSSYSSSGTL PS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [233-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSNKSSNHVG VVVGCSVAIP VGVVLILIGL GIFLWKRHQR SKRIKAERMQ EVEEYGFNPN  60
   61 QPSNFRSPNR APSTNNRYRG WNGSPTPAAG NNTNGRPVAP RPSAGAGGAN P

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [344-536]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PAASQPGLLG GSSNSAGPIA AATAAGVGAD ASDAANTGGS FTRPQGARMV RPIGNPPDLS  60
   61 ASNEAEATMP PSNGSNFSEG LSASPFESGP AVGAAGAAAE AAEHSGSGSD SYPEGPLATI 120
  121 PESDSESMAS DLAGESSYGS RAALSSRSQS NLLSPTSTGA SNQPNYSPFA DNPSSSNVSI 180
  181 PRSSSEARRL NLF

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.09
Match:	1p9hA
Description:	CRYSTAL STRUCTURE OF THE COLLAGEN-BINDING DOMAIN OF YERSINIA ADHESIN YadA
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits