YRC Public Data Repository - Protein Structure Prediction

Protein:	SPACUNK4.17
Organism:	Schizosaccharomyces pombe
Length:	405 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPACUNK4.17.

Description	E-value	Query Range	Subject Range
gi\|20807145 - gi\|20807145\|ref\|NP_622316.1\| predicted dehydrogenase and related proteins [Thermoanaerobacter tengco... gi\|20807145, gi\|... - gi\|20807145\|ref\|NP_622316.1\| dehydrogenase and related proteins [Thermoanaerobacter tengcongensis MB...	240.0	[0..32]	[405..2]
gi\|146296197, gi... - gi\|82499511\|ref\|ZP_00884954.1\| NADH-dependent dyhydrogenase [Caldicellulosiruptor saccharolyticus DS...	233.0	[0..32]	[404..1]
gi\|89097634, gi\|... - gi\|89097634\|ref\|ZP_01170522.1\| NADH-dependent dehydrogenase [Bacillus sp. NRRL B-14911], gi\|89087493...	231.0	[0..32]	[404..1]
gi\|76587861, gi\|... - gi\|76796792\|ref\|ZP_00779145.1\| Oxidoreductase, N-terminal:Oxidoreductase, C-terminal [Thermoanaeroba... gi\|241903251, gi... - gi\|241903251\|ref\|ZP_04787977.1\| oxidoreductase domain protein [Thermoanaerobacter brockii subsp. fin...	225.0	[0..32]	[404..1]
gi\|89896091, gi\|... - gi\|89896091\|ref\|YP_519578.1\| hypothetical protein DSY3345 [Desulfitobacterium hafniense Y51], gi\|893...	225.0	[0..27]	[405..25]
gi\|167039724, gi... - gi\|167039724\|ref\|YP_001662709.1\| oxidoreductase domain-containing protein [Thermoanaerobacter sp. X5... gi\|242231993, gi... - gi\|242256504\|ref\|ZP_04801394.1\| oxidoreductase domain protein [Thermoanaerobacter sp. X513], gi\|2422...	224.0	[0..32]	[404..1]
gi\|15643180, gi\|... - gi\|4980919\|gb\|AAD35499.1\|AE001720_13 dehydrogenase [Thermotoga maritima MSB8], gi\|15643180\|ref\|NP_22... gi\|7445304 - pir\|\|D72381 dehydrogenase - Thermotoga maritima (strain MSB8)	223.0	[0..35]	[404..1]

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Predicted Domain #1

Region A:
Residues: [1-405]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQNIKDEAYK TYQNVKDEIS SHLPQSAPEP TGPPFKCAIF GCGGINFGTA EGPWNNSQKL  60
   61 ELVLGHRLQV VALLSPHKSS HERVLKQKAE TEYASSYANT REFYSADEYL EYLDSHPEEK 120
  121 PDAYIIGIPP ETHGSTQKGA DLELAILKRF PDASLFIEKP ISAAPVEDAF AVARRLPSES 180
  181 VISVGYMLRY LKTVQKAKEI IKEKNLKVVS TVAKYNSAYI HNSKKFWWIM SESGGPVVEQ 240
  241 GTHFCDLSRY FGGDVEIDSI KVNRVEWDDP SGKLNAMPVD EKTIPPEERI PRFTAASWKY 300
  301 KDGGVGAFTH NITLQGAKYD TCIEVQADGY YLRIVDLYEE PVLYVRSPDS DEEKVYKYPN 360
  361 DDPYYSEFKI FLDAAEGKGD KNLIHSDFLD AVKTYELTKA ITEAK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	47.522879
Match:	1h6aA
Description:	Glucose-fructose oxidoreductase, N-terminal domain; Glucose-fructose oxidoreductase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.78200502277054	bayes_pls_golite062009
oxidoreductase activity	0.589092744660572	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: