YRC Public Data Repository - Protein Structure Prediction

Protein:	SPACUNK4.10
Organism:	Schizosaccharomyces pombe
Length:	334 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPACUNK4.10.

Description	E-value	Query Range	Subject Range
SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii GN=serA PE=3 SV=1 SERA_METJA - D-3-phosphoglycerate dehydrogenase OS=Methanocaldococcus jannaschii (strain ATCC 43067 / DSM 2661 / ...	341.0	[0..8]	[329..3]
gi\|114558531 - gi\|114558531\|ref\|XP_001141039.1\| PREDICTED: phosphoglycerate dehydrogenase isoform 5 [Pan troglodyte...	338.0	[0..1]	[330..41]
gi\|26345686 - gi\|26345686\|dbj\|BAC36494.1\| unnamed protein product [Mus musculus]	338.0	[0..1]	[330..1]
gi\|5771523, gi\|2... - gi\|5771523\|gb\|AAD51415.1\|AF171237_1 3-phosphoglycerate dehydrogenase [Homo sapiens], gi\|2674062\|gb\|A...	337.0	[0..1]	[330..1]
SERA_RAT - D-3-phosphoglycerate dehydrogenase OS=Rattus norvegicus GN=Phgdh PE=1 SV=3	336.0	[0..1]	[330..1]
gi\|67971102 - gi\|67971102\|dbj\|BAE01893.1\| unnamed protein product [Macaca fascicularis]	335.0	[0..1]	[330..1]

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Predicted Domain #1

Region A:
Residues: [1-334]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLSGKPAAL LVGTLKHAHK EWEALGKYAE LKTYSDGTRE DFLAKCKTEF QNVKAICRTY  60
   61 NSKFYMGIFD KEIIDNLPPS VKFICHLGAG YETVDVAACT ARGIQVSHVP KAVDDATADV 120
  121 GIFLMLGALR GFNQGIFELH KNNWNANCKP SHDPEGKTLG ILGLGGIGKT MAKRARAFDM 180
  181 KIVYHNRTPL PEEEAEGAEF VSFDDLLAKS DVLSLNLPLN AHTRHIIGKP EFQKMKRGIV 240
  241 IVNTARGAVM DEAALVEALD EGIVYSAGLD VFEEEPKIHP GLLENEKVIL LPHLGTNSLE 300
  301 TQYKMECAVL MNVKNGIVND SLPNLVPEQR GDIE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	90.221849
Match:	2g76A
Description:	No description for 2g76A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits