YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17A5.08
Organism:	Schizosaccharomyces pombe
Length:	210 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17A5.08.

Description	E-value	Query Range	Subject Range
gi\|47228487 - gi\|47228487\|emb\|CAG05307.1\| unnamed protein product [Tetraodon nigroviridis]	223.0	[0..3]	[204..1]
gi\|109078264, gi... - gi\|109078266\|ref\|XP_001085489.1\| PREDICTED: similar to transmembrane emp24 protein transport domain ...	221.0	[0..16]	[207..30]
TMED7 - transmembrane emp24 protein transport domain containing 7 gi\|114601202, gi... - gi\|114601204\|ref\|XP_001147833.1\| PREDICTED: transmembrane emp24 protein transport domain containing ...	220.0	[0..16]	[207..30]
TMED7_RAT - Transmembrane emp24 domain-containing protein 7 OS=Rattus norvegicus GN=Tmed7 PE=1 SV=1	220.0	[0..16]	[207..32]
gi\|73970483 - gi\|73970483\|ref\|XP_858610.1\| PREDICTED: similar to transmembrane emp24 protein transport domain cont...	215.0	[0..21]	[207..37]
gi\|89273430, gi\|... - gi\|89273430\|emb\|CAJ82650.1\| transmembrane emp24 domain trafficking protein 2 [Xenopus tropicalis], g...	215.0	[0..3]	[206..1]
gi\|41107615, gi\|... - gi\|41107615\|gb\|AAH65441.1\| Transmembrane emp24 domain trafficking protein 2 [Danio rerio], gi\|410546...	215.0	[0..3]	[206..1]
gi\|53130058 - gi\|53130058\|emb\|CAG31437.1\| hypothetical protein [Gallus gallus]	214.0	[0..16]	[207..25]
gi\|28277266, gi\|... - gi\|28277266\|gb\|AAH44095.1\| Rnp24-prov protein [Xenopus laevis], gi\|148222701\|ref\|NP_001080619.1\| coa...	214.0	[0..3]	[206..1]

Back

Predicted Domain #1

Region A:
Residues: [1-141]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVITLSGIT LFLLASLASA IELTFKLENQ EKQCYYLDSF HTGEKTHFTY AVQSGGSFDV  60
   61 DYMIKAPSQK TVALGKKRRQ ADVFFTLEEK GEYEFCFDNH MSTFTDKIVT MEITMENELS 120
  121 LPALTRDEAK DYKKDSMQST V

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.05
Match:	2yrlA
Description:	No description for 2yrlA was found.

Predicted Domain #2

Region A:
Residues: [142-210]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LEISTALSEI DRVQNYFKTR EHRNYSTVKS TQARIFWFSL AESIMVVALS ALQVFIVKTF  60
   61 FKRSGRRGV

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits