YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC4A8.02c
Organism:	Schizosaccharomyces pombe
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC4A8.02c.

Description	E-value	Query Range	Subject Range
gi\|87286513, gi\|... - gi\|87310756\|ref\|ZP_01092883.1\| hypothetical protein DSM3645_07006 [Blastopirellula marina DSM 3645],...	214.0	[0..1]	[139..1]
gi\|42553654, gi\|... - gi\|46125061\|ref\|XP_387084.1\| hypothetical protein FG06908.1 [Gibberella zeae PH-1], gi\|42553654\|gb\|E...	213.0	[0..1]	[141..43]
gi\|38110282, gi\|... - gi\|39952065\|ref\|XP_363749.1\| hypothetical protein MG01675.4 [Magnaporthe grisea 70-15], gb\|EAA56024....	211.0	[0..1]	[140..1]
gi\|169615701, gi... - gi\|169615701\|ref\|XP_001801266.1\| hypothetical protein SNOG_11014 [Phaeosphaeria nodorum SN15], gi\|11...	207.0	[0..1]	[140..67]
gi\|37199911, gi\|... - gi\|37681160\|ref\|NP_935769.1\| hypothetical protein VV2976 [Vibrio vulnificus YJ016], gi\|37199911\|dbj\|...	207.0	[0..3]	[139..2]
gi\|70985254, gi\|... - gi\|70985254\|ref\|XP_748133.1\| UPF0047 domain protein [Aspergillus fumigatus Af293], gi\|66845761\|gb\|EA... gi\|159125944 - gi\|159125944\|gb\|EDP51060.1\| UPF0047 domain protein [Aspergillus fumigatus A1163]	207.0	[0..1]	[141..1]
gi\|27364789, gi\|... - gi\|27364789\|ref\|NP_760317.1\| hypothetical protein VV1_1395 [Vibrio vulnificus CMCP6], gi\|27360934\|gb...	206.0	[0..3]	[139..2]
gi\|91088067 - gi\|91088067\|ref\|XP_967758.1\| PREDICTED: similar to CG31688 CG31688-PA [Tribolium castaneum]	206.0	[0..2]	[142..13]
gi\|108882798, gi... - gi\|157124718\|ref\|XP_001654169.1\| hypothetical protein AaeL_AAEL001875 [Aedes aegypti], gi\|108882798\|...	205.0	[0..2]	[142..201]
gi\|12083272, gi\|... - gi\|8886995\|gb\|AAF80655.1\|AC012190_11 It is a member of an Uncharacterised protein family PF\|01894. ...	204.0	[0..2]	[138..77]

Back

Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVIQRIITL DRRSKGFYII TNDLVKKLPE LKSFSSGTVN FFIQHTSAAL TINENWDADT  60
   61 RADMNDILDK IVPESAGYRH TAEGLDDMPA HVKSSLIGPS LTVPITNGKL SLGTWQDIQL 120
  121 AEFRRQPHSR TIVCTIIGLR SN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	46.522879
Match:	1vmjA
Description:	Crystal structure of hypothetical protein (TM0723) from Thermotoga maritima at 1.52 A resolution
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits