YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17H9.08
Organism:	Schizosaccharomyces pombe
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17H9.08.

Description	E-value	Query Range	Subject Range
gi\|46249805 - gi\|46249805\|gb\|AAH68561.1\| Solute carrier family 25 (mitochondrial carrier; phosphate carrier), memb...	280.0	[0..1]	[325..180]
gi\|109012617 - gi\|109012617\|ref\|XP_001083681.1\| PREDICTED: similar to solute carrier family 25 member 24 isoform 2 ...	280.0	[0..1]	[325..161]
gi\|114558229 - gi\|114558229\|ref\|XP_514375.2\| PREDICTED: solute carrier family 25 member 24 [Pan troglodytes]	279.0	[0..1]	[325..376]
gi\|73984085 - gi\|73984085\|ref\|XP_540952.2\| PREDICTED: similar to solute carrier family 25 (mitochondrial carrier; ...	277.0	[0..5]	[326..148]
gi\|109465464, gi... - gi\|109467461\|ref\|XP_001072301.1\| PREDICTED: similar to calcium-binding transporter [Rattus norvegicu...	276.0	[0..1]	[325..189]

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Predicted Domain #1

Region A:
Residues: [1-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPNSTAQYPE KDSWEFLVKS GIAGGTAGCV AKSVVAPLDR VKILYQTNHA SYRGYAYSRH  60
   61 GLYKAIKHIY HVYGLHGLYQ GHTATLYRVF PYAGIKFVAY EQVRRVLIRD PEHETHARRF 120
  121 LSGSLAGTCS VFFTYPLELI RVRLAYITNT GKNPTLTQVT KDIFHERDFL CNKKYPGLSR 180
  181 LSKICNFYRG FSVTLTGIFP YAGMSFLAYD LATDFFHKQK IDEWVSTKKS DKKLKTWPEL 240
  241 LCGAFAGVCG QTVSYPFEVC RRKMQIGGIR KNKSFLRLKQ VVQTTYKEAG MRGFFVGLTI 300
  301 GYIKVIPMVS TSFFVYNHSK ALLGID

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	69.69897
Match:	1okcA
Description:	structure of mitochondrial ADP/ATP carrier in complex with carboxyatractyloside
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits