YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17H9.07
Organism:	Schizosaccharomyces pombe
Length:	120 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17H9.07.

Description	E-value	Query Range	Subject Range
gi\|46122069, gi\|... - gi\|46122069\|ref\|XP_385588.1\| hypothetical protein FG05412.1 [Gibberella zeae PH-1], gi\|42551002\|gb\|E...	149.0	[0..1]	[110..296]
SRP09_ARATH - Signal recognition particle 9 kDa protein OS=Arabidopsis thaliana GN=SRP9 PE=3 SV=1	138.0	[0..1]	[120..1]
SRP09_MAIZE - Signal recognition particle 9 kDa protein OS=Zea mays GN=SRP9 PE=3 SV=1	135.0	[0..1]	[120..1]
gi\|38110763, gi\|... - gi\|39977009\|ref\|XP_369892.1\| hypothetical protein MG06407.4 [Magnaporthe grisea 70-15], gb\|EAA56436....	130.0	[0..1]	[112..1]
gi\|149391037, gi... - gi\|218197917\|gb\|EEC80344.1\| hypothetical protein OsI_22419 [Oryza sativa Indica Group], gi\|149391037... gi\|52077269, gi\|... - gi\|52077269\|dbj\|BAD46311.1\| putative signal recognition particle 9 kDa protein [Oryza sativa Japonic...	127.0	[0..1]	[120..1]
gi\|49083930, gi\|... - gi\|67515573\|ref\|XP_657672.1\| hypothetical protein AN0068.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	123.0	[0..2]	[115..5]
gi\|41055367, gi\|... - gi\|41055367\|ref\|NP_957390.1\| signal recognition particle 9 [Danio rerio], gi\|29436534\|gb\|AAH49522.1\|...	115.0	[0..1]	[82..1]
gi\|74147199 - gi\|74147199\|dbj\|BAE27503.1\| unnamed protein product [Mus musculus]	114.0	[0..1]	[86..1]
gi\|62857637, gi\|... - gi\|62857637\|ref\|NP_001016786.1\| signal recognition particle 9 [Xenopus (Silurana) tropicalis], gi\|13...	114.0	[0..1]	[78..1]
gi\|47215826 - gi\|47215826\|emb\|CAF96789.1\| unnamed protein product [Tetraodon nigroviridis]	114.0	[0..1]	[82..1]

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Predicted Domain #1

Region A:
Residues: [1-120]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYLQTVNEF FTQSKSLTEA YPKTTKLSIK YRTNEQSQNY LIAKAFESAS GICLKYRTDK  60
   61 AAELGRLLLI ANKLSYVSTG NEIPPEPEQE VVASPVTEQK KAEPSAPPKG SKKKKRGKKK 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.69897
Match:	1914A
Description:	SIGNAL RECOGNITION PARTICLE ALU RNA BINDING HETERODIMER, SRP9/14
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits