YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC14C4.11
Organism:	Schizosaccharomyces pombe
Length:	734 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC14C4.11.

Description	E-value	Query Range	Subject Range
gi\|32416676, gi\|... - gi\|32416676\|ref\|XP_328816.1\| hypothetical protein [Neurospora crassa], gi\|28925580\|gb\|EAA34604.1\| hy... gi\|85111234 - gi\|85111234\|ref\|XP_963840.1\| hypothetical protein [Neurospora crassa OR74A]	707.0	[0..1]	[715..39]
gi\|38109647, gi\|... - gi\|39958840\|ref\|XP_364446.1\| hypothetical protein MG09291.4 [Magnaporthe grisea 70-15], gb\|EAA55484....	693.0	[0..1]	[712..1]
VTC4_SCHPO - Vacuolar transporter chaperone 4 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vtc4 PE=1... vtc4 - vacuolar transporter chaperone (VTC) complex subunit	683.0	[0..1]	[714..1]
gi\|42545891, gi\|... - gi\|46107238\|ref\|XP_380678.1\| hypothetical protein FG00502.1 [Gibberella zeae PH-1], gi\|42545891\|gb\|E...	681.0	[0..1]	[716..1]
gi\|238881520 - gi\|238881520\|gb\|EEQ45158.1\| vacuolar transporter chaperone 4 [Candida albicans WO-1] gi\|46432897, gi\|... - gi\|68489124\|ref\|XP_711583.1\| hypothetical protein CaO19.3363 [Candida albicans SC5314], gi\|68489079\|... orf19.10871, orf... - VTC4 CGDID:CAL0004171 Assembly 19, Contig19-10174 (4235, 2106) CDS, reverse complemented, translated...	680.0	[0..1]	[712..1]
gi\|116180904, gi... - gi\|88185377\|gb\|EAQ92845.1\| hypothetical protein CHGG_01080 [Chaetomium globosum CBS 148.51], gi\|1161...	661.0	[0..1]	[715..1]
gi\|207343937 - gi\|207343937\|gb\|EDZ71240.1\| YJL012Cp-like protein [Saccharomyces cerevisiae AWRI1631] gi\|190409478 - gi\|190409478\|gb\|EDV12743.1\| vacuolar transporter chaperone 4 [Saccharomyces cerevisiae RM11-1a] gi\|151945066 - gi\|151945066\|gb\|EDN63317.1\| vacuolar transporter chaperone [Saccharomyces cerevisiae YJM789] VTC4_YEAST - Vacuolar transporter chaperone 4 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VTC4 PE... VTC4 - Vacuolar membrane polyphosphate polymerase; subunit of the vacuolar transporter chaperone (VTC) comp...	658.0	[0..1]	[711..1]
gi\|49525971, gi\|... - gi\|50288467\|ref\|XP_446663.1\| unnamed protein product [Candida glabrata], gi\|49525971\|emb\|CAG59590.1\|... gi\|49525971 - gi\|49525971\|emb\|CAG59590.1\| unnamed protein product [Candida glabrata]	653.0	[0..1]	[711..1]
gi\|45201412, gi\|... - gi\|45201412\|ref\|NP_986982.1\| AGR316Cp [Ashbya gossypii ATCC 10895], gi\|44986346\|gb\|AAS54806.1\| AGR31... gi\|44986346 - gi\|44986346\|gb\|AAS54806.1\| AGR316Cp [Ashbya gossypii ATCC 10895]	644.0	[0..1]	[711..1]

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Predicted Domain #1

Region A:
Residues: [1-202]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRFSDSIEAG IYEPWRDKYM NYPELKHLLK TEEEAPSWGE NDESKFVSVM DAQLEKVYAF  60
   61 HLEILKELNE SVDWVKSKVS ASQEPDGPPI SKEEAIKLLE RLDSCTETVK KLEKYTRLNL 120
  121 TGFFKIVKKH DKLYPGYSLR PVFQVRLRAC PLGSVQFNPL LAEIFSLYNT LRDGLSAPSN 180
  181 SVQVKPKHEH NVDYNSSMYR RR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	48.552842
Match:	PF03105.10
Description:	No description for PF03105.10 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [203-487]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TFRFWVHPDN VMEVKTYIMR HLPVLYYSGK QGFDKDQNGV SGILDPISTC LYLDNSNFDL  60
   61 YSQNLERSEQ AYSLRLHWYG KLTPKTDIIV ERMVRQGSTL SHSEDRFTIR EKKVRELLSG 120
  121 RYDFRKVEDD HSTTASDQKK KLIEDVEQLI VDNHLQPVLR SVYTRTAFQI PGDDEVRINL 180
  181 DSDWVMIRED SLDIERPCRD PEDWHRHDID DADFPYKHLR KGEYSRFPYS VLEIRECVRY 240
  241 DEDEPLWISE LRNSHLISEI DGFSKYEHGV AILFEKYVSL LPMWV

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.66
Match:	2gfgA
Description:	No description for 2gfgA was found.

Predicted Domain #3

Region A:
Residues: [488-604]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FSMDQDIRKD LQEVYSHPEG SAGSRNVYIK RRNQRVLKQN MTPEPSQPSP LVNRLKANEM  60
   61 HPVSEEPEDN REVYRNEHGD HFNFRSIPGL LKPSTYGSFK HHGKTFVTPP HIKKPEI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [605-734]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PLRVSGPIKV EAKVWLANER TFLKWLHVVV LLGSLALALY NSAGERLGQA FGVVYTLLAI  60
   61 FIGFYAWKLH AKRSQMIKSR SPAPMTDYWG PLIVGTALAI SLIVNMSFAL KDAVYQNLIE 120
  121 PDRLLVKLFT

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits