YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC23C11.03
Organism:	Schizosaccharomyces pombe
Length:	598 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC23C11.03.

Description	E-value	Query Range	Subject Range
gi\|9916, gi\|627059 - gi\|9916\|emb\|CAA39663.1\| liver stage antigen [Plasmodium falciparum], pir\|\|A45592 liver stage antigen...	187.0	[0..3]	[594..1043]
gi\|124802937, gi... - gi\|23508159\|ref\|NP_700829.1\| liver stage antigen, putative [Plasmodium falciparum 3D7], gi\|23495223\|...	181.0	[0..3]	[595..398]
MDN1 - MDN1, midasin homolog (yeast)	167.0	[0..15]	[545..4687]
gi\|114608501 - gi\|114608501\|ref\|XP_518639.2\| PREDICTED: MDN1, midasin homolog [Pan troglodytes]	159.0	[0..15]	[545..4687]
gi\|109072060 - gi\|109072060\|ref\|XP_001091687.1\| PREDICTED: MDN1, midasin homolog, partial [Macaca mulatta]	157.0	[0..15]	[545..3159]
gi\|76625861 - gi\|76625861\|ref\|XP_870686.1\| PREDICTED: similar to Midasin (MIDAS-containing protein) isoform 2 [Bos...	153.0	[0..15]	[545..4677]
MPP10 - Component of the SSU processome and 90S preribosome, required for pre-18S rRNA processing, interacts... MPP10_YEAST - U3 small nucleolar RNA-associated protein MPP10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S2...	149.0	[0..11]	[598..18]
CG13097-PA - This gene is referred to in FlyBase by the symbol Dmel\CG13097 (CG13097, FBgn0032051). It is a prote...	147.0	[0..3]	[596..21]
gi\|45185718, gi\|... - gi\|45185718\|ref\|NP_983434.1\| ACR031Wp [Ashbya gossypii ATCC 10895], gi\|44981473\|gb\|AAS51258.1\| ACR03... gi\|44981473 - gi\|44981473\|gb\|AAS51258.1\| ACR031Wp [Ashbya gossypii ATCC 10895]	145.0	[0..3]	[589..6]

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Predicted Domain #1

Region A:
Residues: [1-213]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTELINSEPT LFLFPNKEDS KQLVEKAIEV FSNIKIPSTS PIQTIVTKGL DNWQIYNQLA  60
   61 LAAKYALDDL PQVDVENEDE EEDSITSFQD EDDETSHQEL SDNSEMNNRD DADDEFLGFS 120
  121 GPENLEDVDE SSAEDVSGDE AEIMNEEGQQ IEQKKDAFGL NDGFFDIDNF NKQTLALEEE 180
  181 AVEEGVLGDE DDGIDLLMDP DENMEDSEDE SNG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [214-598]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQADSIMYED FFGPKTAAGR RELKKKKAES KRKRTSKPDF KNDVQQNVIE ENNESSDNEY  60
   61 ATFDRVKKDL FASDEEDDVS ADQLSSYERD KARLTQQIRE LEAENVAKKS WTMMGEATSK 120
  121 GRPSNSLLDV DLEFETGAKP VPVQTEETTE TLEDLIKNRI ISKTFDDVPK RAPVAVTEFR 180
  181 PSELFELNEN KSQRSLAEEY EEEFLKKSNA DTYKSEADKK KEKEHEEIKA LFSEVSRTLD 240
  241 SLASWHYVPP PPESTVEIVS NAPTLAMEDV QPTAASDTMA LAPQEVYKPS NENREGETIT 300
  301 RSGIAISSTE MDHQQKQARR RRVRRKHAEK RKQMAEKRRN SGTEQVVRQL SKSNVEVIGK 360
  361 GGERKKVASN SNKYHPIVSS NQLKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	3.30103
Match:	1i84S
Description:	Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits