YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1B1.02c
Organism:	Schizosaccharomyces pombe
Length:	537 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1B1.02c.

Description	E-value	Query Range	Subject Range
gi\|39965347, gi\|... - gi\|39965347\|ref\|XP_365092.1\| hypothetical protein MGG_09937 [Magnaporthe grisea 70-15], gb\|EAA46716....	473.0	[0..33]	[537..98]
gi\|28926201, gi\|... - gi\|32420519\|ref\|XP_330703.1\| hypothetical protein [Neurospora crassa], gi\|28926201\|gb\|EAA35184.1\| hy... gi\|85112830 - gi\|85112830\|ref\|XP_964420.1\| hypothetical protein NCU03267 [Neurospora crassa OR74A]	442.0	[0..21]	[520..176]
gi\|40742662, gi\|... - gi\|67901358\|ref\|XP_680935.1\| hypothetical protein AN7666.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	439.0	[0..2]	[523..76]
gi\|42545074, gi\|... - gi\|46108416\|ref\|XP_381266.1\| hypothetical protein FG01090.1 [Gibberella zeae PH-1], gi\|42545074\|gb\|E...	430.0	[0..23]	[531..178]
gi\|83772001 - gi\|83772001\|dbj\|BAE62131.1\| unnamed protein product [Aspergillus oryzae] gi\|169777597 - gi\|169777597\|ref\|XP_001823264.1\| hypothetical protein [Aspergillus oryzae RIB40]	422.0	[0..13]	[522..146]
gi\|88186149, gi\|... - gi\|88186149\|gb\|EAQ93617.1\| hypothetical protein CHGG_01852 [Chaetomium globosum CBS 148.51], gi\|1161...	421.0	[0..33]	[515..177]
gi\|238881008 - gi\|238881008\|gb\|EEQ44646.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46438306, gi\|... - gi\|68478731\|ref\|XP_716634.1\| hypothetical protein CaO19.7393 [Candida albicans SC5314], gi\|46438306\|... orf19.7393 - orf19.7393 CGDID:CAL0004835 Assembly 19, Contig19-2513 (124431, 122653) CDS, reverse complemented, t...	413.0	[0..6]	[536..25]
gi\|114189636, gi... - gi\|115433294\|ref\|XP_001216784.1\| hypothetical protein ATEG_08163 [Aspergillus terreus NIH2624], gi\|1...	406.0	[0..106]	[514..1]

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Predicted Domain #1

Region A:
Residues: [1-219]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPGSKLSED ETFSQTFNEE EQEDSRNKDI LAFDPSVDNE PLLTKKLSSL SIYSEPSPDE  60
   61 ASNLQELKFV SSPPSVRVPR SRRNRRNSRV DSEARKRQFD RVKHSVSNSC KLHLSLQGQE 120
  121 AAQLRSDSLY LEASDKRDLT SLVTRVKELA RKLSAARLAF RFRKVLLICN DNKESIERSV 180
  181 ELAQWLLDTF SFTPSSSHNN MASSNTQSNT QLSEMESEE

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [220-537]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KSFNKDVYPN DEYTPFTPKN QFVIYLEDTL ASLDVVESLS PKKNVRFWTS ELCTQCPNLF  60
   61 DCVITVGDDS AALRASWLFQ DVVPPVLSFS TAKAGFLSIL PIAEYTKTLD LIFHRGFTVN 120
  121 LRMRFQCSIM RYVGEHSTHI CEGQYSVLNE LLIDRGPNPF MISLDLYVEN EYITTLQSDG 180
  181 VCVSTPTGST AYSVAAGGSL CHPGIPAILI SAICPHSLSF RPIILPDSMT LRIVVPLDAR 240
  241 SNAWCAFDGH HRIELGLGDY ISISASSFPF PSVIRSKYSK DWFDILRQTL NWNDRKGRQR 300
  301 SSRYKSHVHK TNTSEEQN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	95.09691
Match:	2an1A
Description:	Structural Genomics, The crystal structure of a putative kinase from Salmonella typhimurim LT2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits