YRC Public Data Repository - Protein Structure Prediction

Protein:	stg1
Organism:	Schizosaccharomyces pombe
Length:	174 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for stg1.

Description	E-value	Query Range	Subject Range
gi\|60818291 - gi\|60818291\|gb\|AAX36458.1\| calponin 2 [synthetic construct] gi\|187950321, gi... - gi\|49456577\|emb\|CAG46609.1\| CNN2 [Homo sapiens], gi\|187950321\|gb\|AAI48265.1\| Calponin 2 [Homo sapien...	216.0	[0..3]	[173..28]
CNN2_MOUSE - Calponin-2 OS=Mus musculus GN=Cnn2 PE=1 SV=1	216.0	[0..3]	[173..28]
gi\|114630314 - gi\|114630314\|ref\|XP_001156976.1\| PREDICTED: similar to neutral calponin isoform 2 [Pan troglodytes]	215.0	[0..3]	[173..28]
gi\|109075217, gi... - gi\|109075217\|ref\|XP_001110816.1\| PREDICTED: similar to calponin 2 isoform a isoform 4 [Macaca mulatt...	213.0	[0..3]	[173..28]
gi\|38078845\|ref\|... - similar to Calponin H2, smooth muscle gi\|169154613, gi... - gi\|70906162\|gb\|AAZ14863.1\| calponin 2 [Danio rerio], gi\|169154613\|emb\|CAQ14480.1\| calponin 2 [Danio ...	212.0	[0..3]	[173..27]
gi\|73987361 - gi\|73987361\|ref\|XP_854646.1\| PREDICTED: similar to calponin 2 isoform a isoform 1 [Canis familiaris]	211.0	[0..3]	[173..28]
CNN2_BOVIN - Calponin-2 OS=Bos taurus GN=CNN2 PE=2 SV=3	211.0	[0..3]	[173..28]

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Predicted Domain #1

Region A:
Residues: [1-174]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSQLEKEAR EWIEETLHTK LNAQLDLLDQ LQSGVILCRI CKEALGANIR YKESNMPFVQ  60
   61 MENISAFINY AQQVVHVPSQ DMFQTSDLFE RRNDEQVLRS IHSFSRYAAK MFPGKVRGLG 120
  121 PKLAEKKPRV FSAQQQREFR EGVNSLQYGS FDMPTQGTEK IAFSRRRDPT GNMY

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	34.69897
Match:	1wynA
Description:	Solution structure of the CH domain of human calponin-2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits