YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3A12.13c
Organism:	Schizosaccharomyces pombe
Length:	274 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3A12.13c.

Description	E-value	Query Range	Subject Range
EIF3J_RAT - Eukaryotic translation initiation factor 3 subunit J OS=Rattus norvegicus GN=Eif3j PE=1 SV=1	173.0	[0..2]	[274..13]
EI3JB_MOUSE - Eukaryotic translation initiation factor 3 subunit J-B OS=Mus musculus GN=Eif3j2 PE=1 SV=1	172.0	[0..2]	[274..17]
gi\|220945234, gi... - gi\|220955052\|gb\|ACL90069.1\| Adam-PA [synthetic construct], gi\|220945234\|gb\|ACL85160.1\| Adam-PA [synt... FBpp0308512, Adam-PA - The gene Adam is referred to in FlyBase by the symbol Dmel\Adam (CG12131, FBgn0027619). It is a prot...	165.0	[0..17]	[274..4]
gi\|42545181, gi\|... - gi\|46108922\|ref\|XP_381519.1\| hypothetical protein FG01343.1 [Gibberella zeae PH-1], gi\|42545181\|gb\|E...	164.0	[0..7]	[215..184]
gi\|4503511, gi\|3... - ref\|NP_003749.1\| eukaryotic translation initiation factor 3, subunit 1 alpha, 35kDa [Homo sapiens],...	164.0	[0..2]	[274..12]
gi\|109080918 - gi\|109080918\|ref\|XP_001110624.1\| PREDICTED: similar to Eukaryotic translation initiation factor 3 su... gi\|10435304 - gi\|10435304\|dbj\|BAB14555.1\| unnamed protein product [Homo sapiens]	164.0	[0..2]	[274..12]
EIF3J_PONAB - Eukaryotic translation initiation factor 3 subunit J OS=Pongo abelii GN=EIF3J PE=2 SV=1 IF31_PONPY - Eukaryotic translation initiation factor 3 subunit 1 - Pongo pygmaeus (Orangutan)	164.0	[0..2]	[274..13]
gi\|74000441 - gi\|74000441\|ref\|XP_544656.2\| PREDICTED: similar to Eukaryotic translation initiation factor 3 subuni...	164.0	[0..2]	[274..13]
EIF3J_DROER - Eukaryotic translation initiation factor 3 subunit J OS=Drosophila erecta GN=Adam PE=3 SV=1	163.0	[0..17]	[274..4]

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Predicted Domain #1

Region A:
Residues: [1-135]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSWEDFLVE DPAKPAEFDF PLGKDSQSSS KPKKRFDDEE DEDEEENKES LQNDSHSVSQ  60
   61 KSSSSSQNDQ GSNKMTRIQQ KIQERNFEKA IKASEAAAKE ESLESSKEAM RQAEIDSDLA 120
  121 NAMDLFDIVD KNSAS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [136-274]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ANRSKQADQR QLKTKADYAA FQADILKKVK NCQTTAEYNN FVQDLIPLLL TGLNATNLKA  60
   61 VQKSVNKLVV NKEQQEKTQS KRGAAAPAAK PVSTAAPSKK GGKPTVNVNS KKTVADKSAY 120
  121 EDYIEDEYDD YADDFDDFM

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits