YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3A12.08
Organism:	Schizosaccharomyces pombe
Length:	214 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3A12.08.

Description	E-value	Query Range	Subject Range
gi\|40746633, gi\|... - gi\|67518061\|ref\|XP_658800.1\| hypothetical protein AN1196.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	180.0	[0..5]	[209..50]
gi\|42547796, gi\|... - gi\|46108896\|ref\|XP_381506.1\| hypothetical protein FG01330.1 [Gibberella zeae PH-1], gi\|42547796\|gb\|E...	177.0	[0..9]	[214..47]
SPAPB2B4.06 - conserved fungal protein gi\|19114804 - gi\|19114804\|ref\|NP_593892.1\| hypothetical protein SPAPB2B4.06 [Schizosaccharomyces pombe 972h-]	163.0	[0..1]	[214..26]
gi\|115491463, gi... - gi\|115491463\|ref\|XP_001210359.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	162.0	[0..9]	[209..66]
FMP10 - Putative protein of unknown function; the authentic, non-tagged protein is detected in highly purifi... FMP10_YEAST - Uncharacterized mitochondrial membrane protein FMP10 OS=Saccharomyces cerevisiae (strain ATCC 204508...	152.0	[0..16]	[213..36]
gi\|169781616 - gi\|169781616\|ref\|XP_001825271.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83774013 - gi\|83774013\|dbj\|BAE64138.1\| unnamed protein product [Aspergillus oryzae]	150.0	[0..9]	[209..74]
gi\|70995376, gi\|... - gi\|70995376\|ref\|XP_752445.1\| thioesterase family protein [Aspergillus fumigatus Af293], gi\|66850080\|...	145.0	[0..3]	[209..72]
THEM4 - thioesterase superfamily member 4	140.0	[0..55]	[212..82]
gi\|45187487, gi\|... - gi\|45187487\|ref\|NP_983710.1\| ADL386Wp [Ashbya gossypii ATCC 10895], gi\|44982225\|gb\|AAS51534.1\| ADL38... gi\|44982225 - gi\|44982225\|gb\|AAS51534.1\| ADL386Wp [Ashbya gossypii ATCC 10895]	138.0	[0..16]	[213..57]

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Predicted Domain #1

Region A:
Residues: [1-214]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKLFQNKL LLAGIGGFMV GGLASWVVSS DAYTAYHRLP ASAKHISEIS KSPEAVQMID  60
   61 NIYRERQRSM KMEEHPSLLQ SKYPSNFLSF KDGLIPVFKT FYDPEHEEWI SIGLMGKALT 120
  121 GYQKLAHGGA IATLLIESLE TVRNLRSSQA NSQSTQPRDP IPTENFDVRT PSYSINYKKP 180
  181 VPAGDWVIVR VKDDVARLYN SKSQLLAEAL DLQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	14.30103
Match:	1zkiA
Description:	Structure of conserved protein PA5202 from Pseudomonas aeruginosa
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits