YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17C9.14
Organism:	Schizosaccharomyces pombe
Length:	232 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17C9.14.

Description	E-value	Query Range	Subject Range
gi\|109498406, gi... - ref\|XP_225711.2\| similar to PxF protein [Rattus norvegicus], gi\|109498406\|ref\|XP_225711.4\| PREDICTED...	233.0	[0..3]	[227..104]
gi\|31543533, gi\|... - gi\|31543533\|ref\|NP_075528.2\| peroxisomal biogenesis factor 19 [Mus musculus], gi\|12849757\|dbj\|BAB284...	202.0	[0..4]	[227..40]
gi\|90076598 - gi\|90076598\|dbj\|BAE87979.1\| unnamed protein product [Macaca fascicularis] gi\|109017646 - gi\|109017646\|ref\|XP_001117501.1\| PREDICTED: similar to peroxisomal biogenesis factor 19 isoform 3 [M...	202.0	[0..5]	[227..41]
PEX19_PONAB - Peroxisomal biogenesis factor 19 OS=Pongo abelii GN=PEX19 PE=2 SV=1 PEX19_PONPY - Peroxisomal biogenesis factor 19 - Pongo pygmaeus (Orangutan)	200.0	[0..5]	[227..41]

Back

Predicted Domain #1

Region A:
Residues: [1-232]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPTIEGDE NRKENTKSNT KPNFDDLDDL DDILDDLDVP SAFKNEEKKN IDEHKQTGNT  60
   61 SKENERIKND DNLNSLIQEM MSKFEDLGGP SGLDGSQLSS SFQNDQLLNV ILEDQFATEK 120
  121 DSDNGAVNYG ALEAALNSLM SQVTSKEILY EPLKDLEANY PKFLKNAKET EKQGFEEQYQ 180
  181 KIQKCIQIFE SPEYDARKDA DIISKLVEEI QEKPLPAPLI DNSMETAGCP TQ

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits