YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC17C9.12
Organism:	Schizosaccharomyces pombe
Length:	319 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC17C9.12.

Description	E-value	Query Range	Subject Range
gi\|61365583, gi\|... - gi\|61365587\|gb\|AAX42732.1\| VAMP-associated protein A [synthetic construct], gi\|61365583\|gb\|AAX42731....	219.0	[0..1]	[252..8]
gi\|197100195 - gi\|197100195\|ref\|NP_001126643.1\| VAMP (vesicle-associated membrane protein)-associated protein A, 33... VAPA - VAMP (vesicle-associated membrane protein)-associated protein A, 33kDa VAPA_PONPY - (Q5R601) Vesicle-associated membrane protein-associated protein A (VAMP-associated protein A) (VAMP-...	219.0	[0..1]	[252..8]
gi\|73962054, gi\|... - gi\|73962056\|ref\|XP_859801.1\| PREDICTED: similar to Vesicle-associated membrane protein-associated pr...	213.0	[0..1]	[252..15]
gi\|6671046 - gi\|6671046\|gb\|AAF23076.1\| VAMP-associated protein 33a [Mus musculus]	211.0	[0..1]	[252..8]
VAPA_RAT - (Q9Z270) Vesicle-associated membrane protein-associated protein A (VAMP-associated protein A) (VAMP-...	210.0	[0..1]	[252..8]

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Predicted Domain #1

Region A:
Residues: [1-125]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALECDSTIV FPRPLTRLVK CDLELRNTAP YPIGFKVKTT APKQYCVRPN GGRIEANSAV  60
   61 SVEVILQPLD HEPAPGTKCR DKFLVQSTEL KPELQGMDIA DIWTQVSKAN ISERKIRCVY 120
  121 SEGPS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.045757
Match:	1grwA
Description:	Major sperm protein, MSP
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
protein binding	1.38752281572098	bayes_pls_golite062009
binding	1.31179124589449	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [126-223]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TANAHANAHH QPAQTTTTSI PTSATDNYTT VNGNVNQSYS KGIDGTALPS THANPVAAPS  60
   61 TATTQHTQLP KTSAVSHQKP HEAPSTAVKA PTATVAEN

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [224-319]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EPYPKPQSVP TTTSPNNENN ALRSTANVIN NTRQSTATSP SMFAGNSGNQ IGLARVSSSF  60
   61 GRPTSGAKVV PQIHNTVTVQ TAFLLAIICF LIGLLF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.900	a.163.1	Crustacean CHH/MIH/GIH neurohormone
View	Download	0.715	d.57.1	DNA damage-inducible protein DinI
View	Download	0.651	d.58.12	eEF-1beta-like
View	Download	0.603	d.51.1	Eukaryotic type KH-domain (KH-domain type I)
View	Download	0.514	d.58.17	Metal-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: