YRC Public Data Repository - Protein Structure Prediction

Protein:	sam50
Organism:	Schizosaccharomyces pombe
Length:	475 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for sam50.

Description	E-value	Query Range	Subject Range
gi\|77957697, gi\|... - gi\|77957697\|ref\|ZP_00821746.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia be...	317.0	[0..1]	[473..304]
gi\|254791310, gi... - gi\|254791310\|ref\|YP_003076147.1\| hypothetical protein ECSP_0176 [Escherichia coli O157:H7 str. TW143... gi\|253972197, gi... - gi\|254160296\|ref\|YP_003043404.1\| hypothetical protein ECB_00175 [Escherichia coli B str. REL606], gi... gi\|226840702, gi... - gi\|254037596\|ref\|ZP_04871673.1\| outer membrane protein assembly factor yaeT [Escherichia sp. 1_1_43]... gi\|253976406, gi... - gi\|254287099\|ref\|YP_003052847.1\| hypothetical protein ECD_00175 [Escherichia coli BL21(DE3)], gi\|253... gi\|251783735, gi... - gi\|251783735\|ref\|YP_002998039.1\| hypothetical protein B21_00174 [Escherichia coli BL21], gi\|24237600... BAMA_ECOBW - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain K12 / MC4100 / BW2952) GN=ba... gi\|226902248, gi... - gi\|237704336\|ref\|ZP_04534817.1\| outer membrane protein assembly factor yaeT [Escherichia sp. 3_2_53F... gi\|227884910, gi... - gi\|227884910\|ref\|ZP_04002715.1\| outer membrane protein assembly factor YaeT [Escherichia coli 83972]... gi\|192959168, gi... - gi\|75238880\|ref\|ZP_00722862.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... gi\|191172808, gi... - gi\|75240234\|ref\|ZP_00724181.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... BAMA_ECO24 - Outer membrane protein assembly factor BamA OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=... BAMA_ECOHS - Outer membrane protein assembly factor BamA OS=Escherichia coli O9:H4 (strain HS) GN=bamA PE=3 SV=1 gi\|124499755, gi... - gi\|124529599\|ref\|ZP_01700543.1\| surface antigen (D15) [Escherichia coli B], gi\|124499755\|gb\|EAY47238... BAMA_SHIBS - Outer membrane protein assembly factor BamA OS=Shigella boydii serotype 4 (strain Sb227) GN=bamA PE=... gi\|85674369, gi\|... - gi\|89107057\|ref\|AP_000837.1\| hypothetical protein [Escherichia coli str. K-12 substr. W3110], gi\|856... gi\|193063191, gi... - gi\|75258832\|ref\|ZP_00730222.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... gi\|188495809, gi... - gi\|75512189\|ref\|ZP_00734761.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia... YAET_ECOL6 - Outer membrane protein assembly factor yaeT OS=Escherichia coli O6 GN=yaeT PE=3 SV=1 BAMA_SHIB3 - Outer membrane protein assembly factor BamA OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS5... BAMA_SHISS - Outer membrane protein assembly factor BamA OS=Shigella sonnei (strain Ss046) GN=bamA PE=3 SV=1 BAMA_ECOLC - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crook... sp\|B7UIM2\|YAET_ECO27 - Outer membrane protein assembly factor yaeT OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... EG12676 - BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor / Outer membrane protein ... BAMA_SHIFL - Outer membrane protein assembly factor BamA OS=Shigella flexneri GN=bamA PE=2 SV=1 BAMA_ECOL6 - Outer membrane protein assembly factor BamA OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 /... gi\|24111612, gi\|... - gi\|24111612\|ref\|NP_706122.1\| outer membrane protein assembly factor YaeT [Shigella flexneri 2a str. ... BAMA_ECO57 - Outer membrane protein assembly factor BamA OS=Escherichia coli O157:H7 GN=bamA PE=3 SV=1 gi\|30039976, gi\|... - gi\|30061734\|ref\|NP_835905.1\| outer membrane protein assembly factor YaeT [Shigella flexneri 2a str. ... gi\|12512902, gi\|... - gi\|15799859\|ref\|NP_285871.1\| outer membrane protein assembly factor YaeT [Escherichia coli O157:H7 E... EG12676 - BamABCDE complex OM biogenesis outer membrane pore-forming assembly factor / Outer membrane protein ... BAMA_SHIF8 - Outer membrane protein assembly factor BamA OS=Shigella flexneri serotype 5b (strain 8401) GN=bamA P... BAMA_ECOUT - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain UTI89 / UPEC) GN=bamA PE=3 S... gi\|189357088, gi... - gi\|189357088\|gb\|EDU75507.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... gi\|13359635, gi\|... - gi\|15829433\|ref\|NP_308206.1\| outer membrane protein assembly factor YaeT [Escherichia coli O157:H7 s... gi\|189360697, gi... - gi\|189360697\|gb\|EDU79116.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... BAMA_ECOL5 - Outer membrane protein assembly factor BamA OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=ba... gi\|189000478, gi... - gi\|189000478\|gb\|EDU69464.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... YAET_ECOLI, UP05... - Outer membrane protein assembly factor yaeT precursor (Omp85) - Escherichia coli, (P39170) Unknown p... BAMA_ECO8A - Outer membrane protein assembly factor BamA OS=Escherichia coli O8 (strain IAI1) GN=bamA PE=3 SV=1 BAMA_ECO45 - Outer membrane protein assembly factor BamA OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=bamA ... BAMA_ECO55 - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain 55989 / EAEC) GN=bamA PE=3 S... BAMA_ECO7I - Outer membrane protein assembly factor BamA OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=bamA... BAMA_ECOLU - Outer membrane protein assembly factor BamA OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) ... gi\|168789286, gi... - gi\|189371106\|gb\|EDU89522.1\| outer membrane protein assembly complex, YaeT protein [Escherichia coli ... BAMA_ECODH - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain K12 / DH10B) GN=bamA PE=3 SV... gi\|208728121, gi... - gi\|208808320\|ref\|ZP_03250657.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c... gi\|208734522, gi... - gi\|208813245\|ref\|ZP_03254574.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c... BAMA_ECO5E - Outer membrane protein assembly factor BamA OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=ba... BAMA_ECOSE - Outer membrane protein assembly factor BamA OS=Escherichia coli (strain SE11) GN=bamA PE=3 SV=1 BAMA_ECO27 - Outer membrane protein assembly factor BamA OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=... gi\|217320784, gi... - gi\|217324563\|ref\|ZP_03440647.1\| outer membrane protein assembly complex, YaeT protein [Escherichia c...	317.0	[0..1]	[473..304]
BAMA_ECOK1 - Outer membrane protein assembly factor BamA OS=Escherichia coli O1:K1 / APEC GN=bamA PE=3 SV=1	317.0	[0..1]	[473..304]
gi\|238796617, gi... - gi\|77963167\|ref\|ZP_00826979.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia mo...	317.0	[0..1]	[473..304]
BAMA_SHIDS - Outer membrane protein assembly factor BamA OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=bam...	316.0	[0..1]	[473..304]
gi\|34497659, gi\|... - gi\|34497659\|ref\|NP_901874.1\| outer membrane protein [Chromobacterium violaceum ATCC 12472], gi\|34103...	316.0	[0..2]	[474..306]
gi\|75210500, gi\|... - gi\|75210500\|ref\|ZP_00710651.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Escherichia...	316.0	[0..1]	[473..304]
gi\|77977740, gi\|... - gi\|77977740\|ref\|ZP_00833181.1\| COG4775: Outer membrane protein/protective antigen OMA87 [Yersinia in...	315.0	[0..1]	[473..304]
gi\|168823253, gi... - gi\|205340481\|gb\|EDZ27245.1\| outer membrane protein assembly complex, YaeT protein [Salmonella enteri... gi\|214000833 - gi\|214000833\|ref\|ZP_03411568.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... BAMA_SALTI - Outer membrane protein assembly factor BamA OS=Salmonella typhi GN=bamA PE=3 SV=1 gi\|213646661 - gi\|213646661\|ref\|ZP_03376714.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|213425950 - gi\|213425950\|ref\|ZP_03358700.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|213163131 - gi\|213163131\|ref\|ZP_03348841.1\| outer membrane protein assembly factor YaeT [Salmonella enterica sub... gi\|29136388, gi\|... - gi\|29140764\|ref\|NP_804106.1\| outer membrane protein assembly factor YaeT [Salmonella enterica subsp.... gi\|16759214 - gi\|16759214\|ref\|NP_454831.1\| outer membrane protein assembly factor YaeT [Salmonella enterica subsp.... YAET_SALTI - Outer membrane protein assembly factor yaeT OS=Salmonella typhi GN=yaeT PE=3 SV=1	315.0	[0..1]	[473..304]
BAMA_SALPA - Outer membrane protein assembly factor BamA OS=Salmonella paratyphi A (strain ATCC 9150 / SARB42) GN... YAET_SALPA - Outer membrane protein assembly factor yaeT OS=Salmonella paratyphi A GN=yaeT PE=3 SV=1 BAMA_SALPK - Outer membrane protein assembly factor BamA OS=Salmonella paratyphi A (strain AKU_12601) GN=bamA PE=...	315.0	[0..1]	[473..304]

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Predicted Domain #1

Region A:
Residues: [1-475]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEQFESTSF PSDIPAVNEE SKLSAEETFK SLSEILAENS TLPVGISSIR VTGAHHTRPS  60
   61 FIRKVLKTCL DTSKPAKSRS LLETLNAIQE TTGNLMAFNV YETANIKIDR ASSSVSGDDD 120
  121 LDVTIQVKEK PRLYVETGTD VGNVEGNVHA NVLARNVFGG AELLSGNVSY GTRNRSTMSV 180
  181 NFETPVNADP KTRLRFNGHS NLRDNKSISS HDLLTKGITL SLQHQDLWSG EHLLSQNLLW 240
  241 RQVTHLTEYA SPSVRLEAGD SLKQSLSYTY TRDTRDHLMI PTKGDYVRQT LELAGFGFLP 300
  301 GDASFLKSEF WGQKAVALNS SRSVSLSLSA RIGALHSLNK KQVSLCDRFM LGGSTSLRGF 360
  361 SEDRIGPKDG RDSLGGTAYM AFSMSLLFPL PKVDASKPFR LQLFANAGGL SNLTSPNPCG 420
  421 TYKSILSKPC ISTGLGLVYA TPAARFELNF TLPIATTEKD IGRKGLQFGA GIDFM

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.0
Match:	2qdzA
Description:	No description for 2qdzA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits