YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC12B10.15c
Organism:	Schizosaccharomyces pombe
Length:	147 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC12B10.15c.

Description	E-value	Query Range	Subject Range
gi\|39944238, gi\|... - gi\|39944238\|ref\|XP_361656.1\| hypothetical protein MG04130.4 [Magnaporthe grisea 70-15], gb\|EAA50371....	191.0	[0..3]	[138..2]
gi\|42550735, gi\|... - gi\|46116820\|ref\|XP_384428.1\| hypothetical protein FG04252.1 [Gibberella zeae PH-1], gi\|42550735\|gb\|E...	173.0	[0..4]	[139..2]
gi\|28923812, gi\|... - gi\|32408179\|ref\|XP_324571.1\| predicted protein [Neurospora crassa], gi\|28923812\|gb\|EAA32977.1\| predi... gi\|85106579 - gi\|85106579\|ref\|XP_962213.1\| hypothetical protein NCU05214 [Neurospora crassa OR74A]	167.0	[0..3]	[139..2]
gi\|116131631, gi... - gi\|119113108\|ref\|XP_309402.3\| AGAP011243-PA [Anopheles gambiae str. PEST], gi\|116131631\|gb\|EAA05041....	160.0	[0..3]	[137..9]
gi\|220692402, gi... - gi\|238501862\|ref\|XP_002382165.1\| ribonuclease H2 subunit C, putative [Aspergillus flavus NRRL3357], ... gi\|169769392 - gi\|169769392\|ref\|XP_001819166.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767024 - gi\|83767024\|dbj\|BAE57164.1\| unnamed protein product [Aspergillus oryzae]	159.0	[0..1]	[139..1]
gi\|7485405, gi\|1... - pir\|\|T00554 hypothetical protein At2g39440 [imported] - Arabidopsis thaliana, gi\|3355473\|gb\|AAC2783...	156.0	[0..18]	[139..89]
gi\|10436946 - gi\|10436946\|dbj\|BAB14937.1\| unnamed protein product [Homo sapiens]	155.0	[0..19]	[139..27]
gi\|114638606 - gi\|114638606\|ref\|XP_508559.2\| PREDICTED: AYP1 protein [Pan troglodytes]	154.0	[0..19]	[139..27]
RNH2C_MOUSE - Ribonuclease H2 subunit C OS=Mus musculus GN=Rnaseh2c PE=1 SV=1	153.0	[0..19]	[139..27]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSVKPIVKL EQAGSSNLEK ASLLPCHISY DGPAPVFEYF HDKIQISNNT HSKTTVCLRG  60
   61 RELNGEELDL PENYTGQVVL CDDGLENDET SEKEIPESTW CINSTFEKVM LWNRDNMRSS 120
  121 EKDQWKRGVL EWIQFASKVK FNCSLYN

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	51.920819
Match:	PF08615.2
Description:	No description for PF08615.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits