YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC12B10.06c
Organism:	Schizosaccharomyces pombe
Length:	139 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC12B10.06c.

Description	E-value	Query Range	Subject Range
gi\|49066720, gi\|... - gi\|71003003\|ref\|XP_756182.1\| hypothetical protein UM00035.1 [Ustilago maydis 521], ref\|XP_397650.1\| ...	133.0	[0..25]	[138..131]
gi\|238878710 - gi\|238878710\|gb\|EEQ42348.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|46445447, gi\|... - gi\|68464673\|ref\|XP_723414.1\| hypothetical protein CaO19.4727 [Candida albicans SC5314], gi\|46445447\|... orf19.4727 - orf19.4727 CGDID:CAL0004404 Assembly 19, Contig19-10215 (10550, 11017) CDS, translated using codon t...	132.0	[0..24]	[138..30]
SDHF2_ASHGO - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Ashbya gossypii (strain ATCC 10895 / CBS... SDHF2_ASHGO - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Ashbya gossypii GN=EMI5 PE=3 SV=1	127.0	[0..32]	[138..48]
SDHF2_YEAST - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 20... EMI5 - Subunit of succinate dehydrogenase, which couples succinate oxidation to ubiquinone reduction; requi...	125.0	[0..31]	[138..48]
gi\|55246793, gi\|... - gi\|58375647\|ref\|XP_307436.2\| ENSANGP00000013481 [Anopheles gambiae str. PEST], gi\|55246793\|gb\|EAA030...	123.0	[0..24]	[138..21]
gi\|86281815, gi\|... - gi\|86357713\|ref\|YP_469605.1\| hypothetical protein RHE_CH02094 [Rhizobium etli CFN 42], gi\|86281815\|g...	123.0	[0..35]	[137..27]
SDHF2_KLULA - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Kluyveromyces lactis (strain ATCC 8585 /... SDHF2_KLULA - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Kluyveromyces lactis GN=EMI5 PE=3 SV=1	123.0	[0..4]	[138..13]
SDHF2_CANGA - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Candida glabrata GN=EMI5 PE=3 SV=1 SDHF2_CANGA - Succinate dehydrogenase assembly factor 2, mitochondrial OS=Candida glabrata (strain ATCC 2001 / CBS...	122.0	[0..32]	[138..41]

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Predicted Domain #1

Region A:
Residues: [1-139]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLRKTNLSNI TTLLRSARCM NRMPQLRFEH TKGDLKRVNR SYETRDAMLA RLKYQSRKRG  60
   61 ILETDLLLSN FAKDQIDKYP VSLLREYDQL LDEPDWDILY WCSGEREAPE KWKSSQVFKE 120
  121 LSKYCRSQRN HTLRMPELF

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	22.39794
Match:	2jr5A
Description:	No description for 2jr5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits