YRC Public Data Repository - Protein Structure Prediction

Protein:	glo3
Organism:	Schizosaccharomyces pombe
Length:	486 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for glo3.

Description	E-value	Query Range	Subject Range
gi\|145020687, gi... - gi\|39951659\|ref\|XP_363546.1\| hypothetical protein MGG_01472 [Magnaporthe grisea 70-15], gb\|EAA55821....	310.0	[0..3]	[479..5]
gi\|42554918, gi\|... - gi\|46136393\|ref\|XP_389888.1\| hypothetical protein FG09712.1 [Gibberella zeae PH-1], gi\|42554918\|gb\|E...	306.0	[0..3]	[479..5]
gi\|115395920, gi... - gi\|115395920\|ref\|XP_001213599.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	298.0	[0..1]	[479..1]
gi\|28923588, gi\|... - gi\|32420969\|ref\|XP_330928.1\| hypothetical protein [Neurospora crassa], gi\|28923588\|gb\|EAA32762.1\| hy... gi\|85105587 - gi\|85105587\|ref\|XP_961998.1\| hypothetical protein NCU08811 [Neurospora crassa OR74A]	291.0	[0..3]	[478..5]
gi\|67539726, gi\|... - gi\|67539726\|ref\|XP_663637.1\| hypothetical protein AN6033.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	286.0	[0..1]	[474..1]
gi\|238493401, gi... - gi\|238493401\|ref\|XP_002377937.1\| ARF GTPase activator (Glo3), putative [Aspergillus flavus NRRL3357]... gi\|83774994 - gi\|83774994\|dbj\|BAE65117.1\| unnamed protein product [Aspergillus oryzae] gi\|169783576 - gi\|169783576\|ref\|XP_001826250.1\| hypothetical protein [Aspergillus oryzae RIB40]	283.0	[0..1]	[481..1]
gi\|119177866, gi... - gi\|90299450\|gb\|EAS29081.1\| hypothetical protein CIMG_07827 [Coccidioides immitis RS], gi\|119177866\|r...	277.0	[0..1]	[483..1]
ARFGAP3 - ADP-ribosylation factor GTPase activating protein 3	272.0	[0..4]	[482..5]
gi\|109106523 - gi\|109106523\|ref\|XP_001110019.1\| PREDICTED: similar to zinc finger protein 289, ID1 regulated isofor...	271.0	[0..1]	[481..1]
gi\|7498564 - gi\|7498564\|pir\|\|T15963 hypothetical protein F07F6.4 - Caenorhabditis elegans	271.0	[0..4]	[482..8]

Back

Predicted Domain #1

Region A:
Residues: [1-144]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTATKEESQK LLTSLRSQRD NKVCFDCGAK NPTWSSTTFG IYLCLDCSAA HRNMGVHISF  60
   61 VRFLRSTVLD SWTYAQLRVM RVGGNENARN YFKRHGGVSL LNSKDCRLKY SSKTAKQYLE 120
  121 KLKSLAVEDE ANYPDILDMD FLSN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	35.69897
Match:	2crwA
Description:	Solution structure of the ArfGap domain of ADP-ribosylation factor GTPaseactivating protein 3 (ArfGap 3)
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [145-343]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 THEGSSAADT TNEDDDFFSA WDKASVKKSD DNLDDKTDLA STSSSVVVES GEKDEPVVVT  60
   61 EEKTMVSPPS RPDSTSTTKS KTSSISSARA RPIRASSRPT ASKLGASRPQ KLGIKKANAD 120
  121 IDFDEFEKAV LSSESAPTKK PAAVASKEST VDTLVDNGVE EVKESTSTTV QGKPVKPVLK 180
  181 SAASAKSTKS DDSNLNANF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [344-486]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ARLGFGQFAA ASNARAKAAA KARELKKNEV NAPTYARDHF ASQKSISSDQ YFGRGSFDPE  60
   61 AAAEAQERLS SFRDATAISS KSYFGEEEDE NEEGESSHRP DSAYLRDIAE TATEDIEAIK 120
  121 VAIHQGAEKL SDFIQKVGAR YNF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits