YRC Public Data Repository - Protein Structure Prediction

Protein:	rer1
Organism:	Schizosaccharomyces pombe
Length:	184 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rer1.

Description	E-value	Query Range	Subject Range
gi\|76637598 - gi\|76637598\|ref\|XP_609109.2\| PREDICTED: similar to RER1 homolog [Bos taurus]	293.0	[0..11]	[182..108]
gi\|47220416 - gi\|47220416\|emb\|CAG03196.1\| unnamed protein product [Tetraodon nigroviridis]	284.0	[0..11]	[182..18]
gi\|39976741, gi\|... - gi\|39976741\|ref\|XP_369758.1\| hypothetical protein MGG_06273 [Magnaporthe grisea 70-15], gb\|EAA56302....	282.0	[0..1]	[184..4]
gi\|7688699 - gi\|7688699\|gb\|AAF67490.1\|AF157324_1 RER1 protein [Homo sapiens]	282.0	[0..11]	[181..18]
gi\|46125821, gi\|... - gi\|46125821\|ref\|XP_387464.1\| hypothetical protein FG07288.1 [Gibberella zeae PH-1], gi\|42554678\|gb\|E...	278.0	[0..2]	[184..5]
gi\|220948254, gi... - gi\|220957496\|gb\|ACL91291.1\| CG11857-PA [synthetic construct], gi\|220948254\|gb\|ACL86670.1\| CG11857-PA... CG11857-PA - This gene is referred to in FlyBase by the symbol Dmel\CG11857 (CG11857, FBgn0039303). It is a prote...	275.0	[0..11]	[183..14]
RER1_MOUSE - Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1 RER1_RAT - Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=1 SV=1	275.0	[0..11]	[182..18]
gi\|32411643, gi\|... - gi\|32411643\|ref\|XP_326302.1\| hypothetical protein [Neurospora crassa], gi\|28918428\|gb\|EAA28102.1\| RE... gi\|85084577 - gi\|85084577\|ref\|XP_957338.1\| RER1 protein [Neurospora crassa OR74A]	275.0	[0..2]	[184..5]
RER1_PONPY - Protein RER1 - Pongo pygmaeus (Orangutan) gi\|108995760, gi... - gi\|108995760\|ref\|XP_001084959.1\| PREDICTED: RER1 retention in endoplasmic reticulum 1 homolog (S. ce... RER1 - RER1 retention in endoplasmic reticulum 1 homolog (S. cerevisiae) gi\|60655621 - gi\|60655621\|gb\|AAX32374.1\| RER1-like [synthetic construct] RER1_PONAB - Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1	275.0	[0..11]	[181..18]
RER1A_ARATH - Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=1 SV=1	275.0	[0..11]	[182..15]

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Predicted Domain #1

Region A:
Residues: [1-184]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEFIQRHIEN VKEKKNFAVR LYRHWVDRTI PYTTYRWLTV SGLIALFFIR ILLVRGWYIV  60
   61 CYTLAIYLLN LFLAFLTPKF DPSVEQAMKD EEIEEGVLPT SKDDEFRPFI RRLPEFKFWY 120
  121 SSMRATLFAL VASFFRIFDV PVFWPILVVY YLVLSFFCFR RQIQHMLKYR YVPFDIGKKK 180
  181 FGSH

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	137.853872
Match:	PF03248.4
Description:	No description for PF03248.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits