YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC1F3.03
Organism:	Schizosaccharomyces pombe
Length:	1004 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC1F3.03.

Description	E-value	Query Range	Subject Range
gi\|39973855, gi\|... - gi\|39973855\|ref\|XP_368318.1\| hypothetical protein MG00926.4 [Magnaporthe grisea 70-15], gb\|EAA49268....	646.0	[0..2]	[1000..68]
gi\|46105430, gi\|... - gi\|46105430\|ref\|XP_380519.1\| hypothetical protein FG00343.1 [Gibberella zeae PH-1], gi\|42546760\|gb\|E...	638.0	[0..2]	[1001..3]
gi\|32423373, gi\|... - gi\|32423373\|ref\|XP_332124.1\| hypothetical protein [Neurospora crassa], gi\|28919958\|gb\|EAA29348.1\| co... gi\|85090786 - gi\|85090786\|ref\|XP_958584.1\| hypothetical protein NCU09432 [Neurospora crassa OR74A]	629.0	[0..2]	[1000..3]
gi\|40741778, gi\|... - gi\|67537440\|ref\|XP_662494.1\| hypothetical protein AN4890.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	621.0	[0..3]	[1001..336]
SRO77 - Protein with roles in exocytosis and cation homeostasis; functions in docking and fusion of post-Gol...	581.0	[0..19]	[1000..17]
gi\|115396338, gi... - gi\|115396338\|ref\|XP_001213808.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	569.0	[0..3]	[1001..4]
gi\|44981666 - gi\|44981666\|gb\|AAS51416.1\| ACR190Cp [Ashbya gossypii ATCC 10895] gi\|44981666, gi\|... - gi\|45185876\|ref\|NP_983592.1\| ACR190Cp [Ashbya gossypii ATCC 10895], gi\|44981666\|gb\|AAS51416.1\| ACR19...	566.0	[0..25]	[1001..25]
gi\|169770683 - gi\|169770683\|ref\|XP_001819811.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83767670 - gi\|83767670\|dbj\|BAE57809.1\| unnamed protein product [Aspergillus oryzae]	563.0	[0..3]	[1000..4]
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	541.0	[0..11]	[650..1184]

Back

Predicted Domain #1

Region A:
Residues: [1-924]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFFKKKLSK GKEILSKSNL KTHTSSNASL SIDDLNRFGF SLNPVLWCLD HQQGLLAIVS  60
   61 STNRIYIYGK QHVQSVIVPD CSTIVHIALC AAYLIVIDSR NTVLSYPLMK HRDLSKPAAT 120
  121 YFLKQKVTCT VTDPTIDWVF FGMSDGSVVP WDVTRHCLGK FKVPNLYVPR HEEWRMMGYS 180
  181 YAPVPGKLSP VVSVQIHPKD LGVILIAYPD GVVLYSIRTD EVIRFYELEY APGSTAAVLS 240
  241 PHNYRRPIVK GIEWSPWGDH FVSYYTDSTF AFWDVDQEYP VQVRNFVDSN IHTYTPMQRN 300
  301 PPKTELEPIR SMRWCCCEDP TVSFILMLGG LPKEAPVKGI SLFSYRNLPA KKDVETFAEF 360
  361 FANPNSQRFF PFIDIPPVRD MLVIPSSSPH YNGSHNPKNL LLLSEDNSLS LLDISTGNIS 420
  421 NMSLSIPPSL CFLASDFRVI AFQTVTKKVW NQIEDTISVN SHYSCLFGGS PSPGYLKKLD 480
  481 ERNLLITSTG LSLSIWDISQ GFMNPSLCVN LDFSSVMRKH LTPSAFITTA SFSTYNPEFS 540
  541 CADSFGRVIV CKRKNHKENL PAQLANGIYR LDDTLVLEGT LHAQYYIDLK RGRVTLNQMS 600
  601 NIGFVCIGYQ DGGITIIDMR GPHILCNTSI SELGLERRGK PDPDFLTSAE FVVMNPKGSP 660
  661 SSIYVVTGTY RGMTLLFRID PSSSGRFSAY FESSRQLDIK NIYKICSLTQ DGQIATATGS 720
  721 SLQSVGYPLP QEVFLVYIGD SGISVFNKIN NQVGNLDWRK PVCCRAALVL STVSKHMGSV 780
  781 VCVNSDLSVN WYSLPNLREE RKMQLPLDID KNRLKEGDIL GNGDYIFPTL GAHELAFGCV 840
  841 LGSGRTLANL APMMLITHNA SHVPPRPSKS LWNWLLGEQS TSAEELDILL GGENRAESKV 900
  901 HTLETPKVIS ARPAESVKQP LTPV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	141.0
Match:	2oajA
Description:	No description for 2oajA was found.

Predicted Domain #2

Region A:
Residues: [925-1004]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PSMTSQSAQS YIPPRRQQQQ KGFFAQINDH LAQRGNMLGG IENTMDDLEE MSAEWANEIK  60
   61 DSLAGTKKDL ILSGLKSYIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.866	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.829	a.159.5	Description not found.
View	Download	0.805	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.778	a.80.1	DNA polymerase III clamp loader subunits, C-terminal domain
View	Download	0.744	a.61.1	Retroviral matrix proteins
View	Download	0.685	a.64.2	Bacteriocin AS-48
View	Download	0.679	a.64.1	Saposin
View	Download	0.659	d.58.44	Multidrug efflux transporter AcrB pore domain; PN1, PN2, PC1 and PC2 subdomains
View	Download	0.514	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.502	a.159.1	Protein serine/threonine phosphatase 2C, C-terminal domain
View	Download	0.469	a.159.5	Description not found.
View	Download	0.390	a.159.5	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits