YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC6C3.02c
Organism:	Schizosaccharomyces pombe
Length:	172 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC6C3.02c.

Description	E-value	Query Range	Subject Range
gi\|46810303, gi\|... - gi\|46810303\|ref\|NP_898911.1\| hypothetical protein LOC71970 [Mus musculus], gi\|26369695\|dbj\|BAC25301....	190.0	[0..1]	[165..1]
gi\|109497259, gi... - gi\|157786908\|ref\|NP_001099394.1\| SCAN domain containing 3 [Rattus norvegicus], gi\|149063159\|gb\|EDM13...	185.0	[0..1]	[165..1]
gi\|55585966, gi\|... - gi\|55585966\|ref\|XP_513051.1\| PREDICTED: similar to 16.7Kd protein isoform 2 [Pan troglodytes], gi\|11...	118.0	[0..43]	[165..20]
gi\|32410883, gi\|... - gi\|32410883\|ref\|XP_325922.1\| hypothetical protein [Neurospora crassa], gi\|28921285\|gb\|EAA30594.1\| hy... gi\|85094135 - gi\|85094135\|ref\|XP_959830.1\| hypothetical protein [Neurospora crassa OR74A]	116.0	[0..1]	[133..589]

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Predicted Domain #1

Region A:
Residues: [1-172]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRRRSAAPP PRRAAPARSA STAAALPPRT MAPPPAPSRV QQAPPPTAVQ GGSSPGFFGN  60
   61 LVSTAAGVGI GSAIGHTVGS VITGGFSGSG SNNAPADTSV PQSSYSNSVP EAAYGSAPPS 120
  121 TFASSAISEE AKNACKGDAK MFADCINEHE FSQCSYYLEQ LKACQAMWSN QQ

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.06
Match:	2i47A
Description:	No description for 2i47A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits