YRC Public Data Repository - Protein Structure Prediction

Protein:	arb2
Organism:	Schizosaccharomyces pombe
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for arb2.

Description	E-value	Query Range	Subject Range
gi\|76661343 - gi\|76661343\|ref\|XP_874267.1\| PREDICTED: similar to CG10038-PB, isoform B [Bos taurus]	243.0	[0..8]	[157..76]
gi\|73952297 - gi\|73952297\|ref\|XP_851856.1\| PREDICTED: similar to CG10038-PB, isoform B [Canis familiaris]	242.0	[0..8]	[157..69]
gi\|109465808 - gi\|109465808\|ref\|XP_001059552.1\| PREDICTED: similar to CG10038-PB, isoform B [Rattus norvegicus]	239.0	[0..8]	[157..78]
gi\|34785392 - gi\|34785392\|gb\|AAH57380.1\| 1110033M05Rik protein [Mus musculus]	238.0	[0..8]	[157..53]
gi\|109078000 - gi\|109078000\|ref\|XP_001090347.1\| PREDICTED: similar to CG10038-PB, isoform B isoform 3 [Macaca mulat...	237.0	[0..8]	[157..45]
FAM172A - family with sequence similarity 172, member A	236.0	[0..8]	[157..45]

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Predicted Domain #1

Region A:
Residues: [1-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFRKKKSRVL QRDVNFGNCL EDMNLQITND FYLRKLNAPN ELYEFQVTKD KEYNEKFYFA  60
   61 VLDHVYSWTL QNSLLTRISI PLESSPSEPH SWIYATRNWQ TNENGIVIII QSMSHPLIWS 120
  121 NRNLREGDVR RATVLDVIAK CTEKKLSVVI FSPSALLWDQ SINFPRVCAN LFNNVYQNLD 180
  181 NPLFHLSGTS NH

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits