YRC Public Data Repository - Protein Structure Prediction

Protein:	mis18
Organism:	Schizosaccharomyces pombe
Length:	155 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mis18.

Description	E-value	Query Range	Subject Range
gi\|2815610 - gi\|2815610\|gb\|AAC39561.1\| Opa-interacting protein OIP5 [Homo sapiens]	191.0	[0..16]	[154..73]
gi\|114656440 - gi\|114656440\|ref\|XP_510321.2\| PREDICTED: Opa interacting protein 5 isoform 2 [Pan troglodytes]	190.0	[0..16]	[154..71]
gi\|12851734 - gi\|12851734\|dbj\|BAB29147.1\| unnamed protein product [Mus musculus]	190.0	[0..18]	[144..49]
gi\|74001388 - gi\|74001388\|ref\|XP_852107.1\| PREDICTED: similar to Protein C21orf45 [Canis familiaris]	188.0	[0..19]	[151..84]
gi\|46098887, gi\|... - gi\|71017729\|ref\|XP_759095.1\| hypothetical protein UM02948.1 [Ustilago maydis 521], ref\|XP_400563.1\| ...	185.0	[0..13]	[133..170]
gi\|109080728 - gi\|109080728\|ref\|XP_001100229.1\| PREDICTED: Opa interacting protein 5 [Macaca mulatta]	185.0	[0..16]	[154..71]

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Predicted Domain #1

Region A:
Residues: [1-155]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSQTETSHSG YIDFKKESQP SVFQCKKCFQ IVGDSNAWVI SHREYLSFTL SDAVENSVRV  60
   61 EDTFKRSDDG LCVYSELSCT RCNEVIGKVY NSTPIYLDDI RDMYTFSMDK LQAYQLGNKT 120
  121 VNPEGLTRYQ VDLEMREDII KACTVILYIV EKNKL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.22
Match:	1xm0A
Description:	Solution NMR Structure of Methionine Sulfoxide Reductase B Using Minimal Constraint Strategy; Northeast Structural Genomics Target SR10
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits