YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC777.04
Organism:	Schizosaccharomyces pombe
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC777.04.

Description	E-value	Query Range	Subject Range
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	325.0	[0..1]	[520..1]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	305.0	[0..37]	[520..1096]
gi\|90301547, gi\|... - gi\|90301547\|gb\|EAS31178.1\| hypothetical protein CIMG_06657 [Coccidioides immitis RS], gi\|119183443\|r...	303.0	[0..1]	[519..32]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	300.0	[0..9]	[520..45]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	292.0	[0..2]	[519..104]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	292.0	[0..38]	[519..138]
gi\|49097590, gi\|... - gi\|67539896\|ref\|XP_663722.1\| hypothetical protein AN6118.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	291.0	[0..16]	[520..107]

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Predicted Domain #1

Region A:
Residues: [1-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSIKSKTII EPSENDIEKG EVDFVSSSIS NFEEAYEEGP SLKREFKSRH VNMISVAGAI  60
   61 GTGLVIGSGS ALLKGGPGSL FIAYLMTGIN LYVVLISLGE MAAFSSDDKG FSGFSSRYVD 120
  121 KALGFATGWN YFFKYAIVYP TNLTAVGIVI HYWRPDLNVG IWVAVFLVVI LAINLLHVKY 180
  181 FGEVEFWLSA VKILVLVTLI ITCIVITSGG TPVHHKIGFH YWRDPGAFAP YLVEGSTGRF 240
  241 LGFWACLVQS CFAYVGSEVV GIAFGEAPNP EKTIRKSSFQ SLFRIATFYV IGVFVLGLCV 300
  301 PYDSDILSSN ASKGNAAASP FVVAIKLAQI KVMPDVINAC LLVFIISSAN SDIYIGSRTL 360
  361 YALAKEGYAP KILMLQTKQG IPWVGCLVTS SFGLLAFMNT KSSSATIFGY FSSAVTVFGT 420
  421 INWINILLSY ICYHRATIVQ QIPTERIPFR SWGQPYIAYA SLIFTGLITF FNGYNAFIHG 480
  481 FKYRSFITSY IGIAAYVIMI LGWKFTFKAK RVTSSTVDFR K

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.6
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits