YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC74.04
Organism:	Schizosaccharomyces pombe
Length:	557 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC74.04.

Description	E-value	Query Range	Subject Range
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	276.0	[0..8]	[554..92]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	275.0	[0..33]	[552..66]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	275.0	[0..52]	[554..138]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	273.0	[0..17]	[553..5]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	270.0	[0..12]	[554..71]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	270.0	[0..4]	[534..1039]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	268.0	[0..56]	[550..145]

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Predicted Domain #1

Region A:
Residues: [1-557]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAIPILDALT SSSGKKNSAE FSIHSTSNPT NPEEPNITSE ADNAEDLAAL GYKQEFQRGL  60
   61 SLFSVFSVSF SLLGLLPSVA TTLPYSIGYT GTPGLLWGWL IAMVFIICIA LSMAELCSAM 120
  121 PTSGGLYYAA AVLAPEGWGP LAAWFTGWSN YIAQLVGGPS INYSTAAMLL GAVNIGNPNY 180
  181 EVQNYQLFLV SIAIQFIHFI LASMPTKYIA KLNSVGTYLN TLFLFISMIV ILAMSSKNHG 240
  241 FNETSKVWSH IENYTDWPDG FAILMSFCGV IWTMSGYDAP FHMSEETANA SVNAPRGIIL 300
  301 TAAIGGIMGW VMQIVIAYTV VDQTAVVTGS DSMWATYLSQ CLPKRAALGI LSLTIVSSFL 360
  361 MGQSNLIASS RIAYSYARDG VLPYSEWVAT VNPITKTPIR AVFVNFVIGV LILFLAFAGA 420
  421 ITIGAVFSVT AIAAFTAFVA PVAMRVFFVK DADFRTGPFN LGKFSKPIGF CSVSFVALMI 480
  481 PILCFPSVKN PTPAEMNWTC LVFGAPMLAV LIWYAISGRK WFKGPRINLA SEGDNSTLEG 540
  541 VELYTGSEEL PQKKEKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits