YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC584.13
Organism:	Schizosaccharomyces pombe
Length:	544 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC584.13.

Description	E-value	Query Range	Subject Range
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	275.0	[0..33]	[544..138]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	275.0	[0..14]	[544..66]
gi\|238482071, gi... - gi\|238482071\|ref\|XP_002372274.1\| amino acid permease (Gap1), putative [Aspergillus flavus NRRL3357],... gi\|169765514 - gi\|169765514\|ref\|XP_001817228.1\| hypothetical protein [Aspergillus oryzae RIB40] gi\|83765083 - gi\|83765083\|dbj\|BAE55226.1\| unnamed protein product [Aspergillus oryzae]	272.0	[0..3]	[544..41]
gi\|85095443 - gi\|85095443\|ref\|XP_960090.1\| general amino-acid permease GAP1 [Neurospora crassa OR74A] gi\|32410409, gi\|... - gi\|32410409\|ref\|XP_325685.1\| hypothetical protein [Neurospora crassa], gi\|28921549\|gb\|EAA30854.1\| ge...	271.0	[0..37]	[544..145]
gi\|833812 - gi\|833812\|gb\|AAB48002.1\| high-affinity glutamine permease	271.0	[0..25]	[544..133]
AGP1_SACBA - General amino acid permease AGP1 OS=Saccharomyces bayanus GN=AGP1 PE=3 SV=1 AGP1_SACU7 - General amino acid permease AGP1 OS=Saccharomyces uvarum (strain ATCC 76518 / CBS 7001 / CLIB 283 / ...	268.0	[0..1]	[537..79]

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Predicted Domain #1

Region A:
Residues: [1-544]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIFKKSSNT APSQHEDVEA LASDEADLAA LGYKQEFKRE FSAWTSFCVS FSVLGLLPSF  60
   61 ASTMYYTTGY AGTPAMVWGW LIAMVFVQCV ANGMAELCSS MPTSGGLYYA AAVLAPKGWG 120
  121 PFAAWLTGWS NYLVQVTGPP SVAYSFAGMI LTLVQLHNPN FETQNYQIFL LAVAAMIAQG 180
  181 FISSMPTKVL AVFNTWGTVL NMLFLAIVMI TVLAVAGTKT PRGFNSNHKV WNEFDNQTDW 240
  241 SNGMAMLMSF AGVIWTMSGY DSPFHLSEEC SNASVAAPRA IVMTSAFGGI VGWLLNLCIA 300
  301 YTIVDVNAAM NDDLGQPFVV YLRQVCNYKT TVALTSLTVI CSFMMGQGCM VAASRVTYSY 360
  361 ARDGVFPFSK YLAIVDKRTK TPNVCVWMNV VVGILCCLLI FAGEAAINAI FSVGAIAAFV 420
  421 AFTTPIFLRV FFVKEDEFKR GPWHLGKFSK INGYAACAFV LLMVPILCFP QFRGKDNTPD 480
  481 AMNWTCVVFG GPMLMVLIWW FVSARKWFKG PRLTIGVDDA VSEINVLEGV TKSDDDSIST 540
  541 LKKK

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.4
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits