YRC Public Data Repository - Protein Structure Prediction

Protein:	SPCC1672.04c
Organism:	Schizosaccharomyces pombe
Length:	101 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPCC1672.04c.

Description	E-value	Query Range	Subject Range
gi\|46444250, gi\|... - gi\|68467255\|ref\|XP_722289.1\| hypothetical protein CaO19.12432 [Candida albicans SC5314], gi\|46444250... orf19.12432 - COX19 CGDID:CAL0006369 Assembly 19, Contig19-20216 (133305, 133712) CDS, translated using codon tabl... gi\|238878283 - gi\|238878283\|gb\|EEQ41921.1\| cytochrome c oxidase assembly protein COX19 [Candida albicans WO-1]	138.0	[0..3]	[99..15]
COX19_USTMA - Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=COX19 PE=... COX19_USTMA - Cytochrome c oxidase assembly protein COX19 OS=Ustilago maydis GN=COX19 PE=3 SV=1	137.0	[0..4]	[81..14]
gi\|25404634, gi\|... - pir\|\|G96691 hypothetical protein T12I7.4 [imported] - Arabidopsis thaliana, gi\|12322293\|gb\|AAG51175...	129.0	[0..4]	[89..52]
COX19 - Protein required for cytochrome c oxidase assembly, located in the cytosol and mitochondrial interme... gi\|151941151 - gi\|151941151\|gb\|EDN59529.1\| cytochrome C oxidase [Saccharomyces cerevisiae YJM789] COX19_YEAST - Cytochrome c oxidase assembly protein COX19 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)... gi\|190406027 - gi\|190406027\|gb\|EDV09294.1\| cytochrome c oxidase assembly protein COX19 [Saccharomyces cerevisiae RM...	129.0	[0..4]	[88..14]
COX19_CRYNJ - Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (s... COX19_CRYNB - Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans var. neoformans serotype D (s... COX19_CRYNE - Cytochrome c oxidase assembly protein COX19 OS=Cryptococcus neoformans GN=COX19 PE=3 SV=1	123.0	[0..4]	[75..14]
CE27165 - status:Confirmed UniProt:Q95ZT5 protein_id:CAC42299.1	121.0	[0..1]	[77..10]
gi\|39580761, gi\|... - gi\|39580761\|emb\|CAE58930.1\| Hypothetical protein CBG02195 [Caenorhabditis briggsae], gi\|187037621\|em... gi\|157746869 - gi\|157746869\|ref\|XP_001668530.1\| Hypothetical protein CBG02195 [Caenorhabditis briggsae AF16]	121.0	[0..1]	[72..10]

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Predicted Domain #1

Region A:
Residues: [1-101]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTREPPERG SFPLDHFGEC THVMKQYLEC IKVKRENQEE CRLLAKKYLQ CRMDTGLFGK  60
   61 DDMKNLGFHG DENATSTSLS SSNDGNNNSN SSSSDNKTGG E

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Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.816	a.118.11	Cytochrome c oxidase subunit E

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits