YRC Public Data Repository - Protein Structure Prediction

Protein:	pmp31
Organism:	Schizosaccharomyces pombe
Length:	105 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pmp31.

Description	E-value	Query Range	Subject Range
gi\|46121245, gi\|... - gi\|46121245\|ref\|XP_385177.1\| hypothetical protein FG05001.1 [Gibberella zeae PH-1], gi\|42551259\|gb\|E...	112.0	[0..7]	[102..4]
gi\|145009364, gi... - gi\|39949765\|ref\|XP_363224.1\| hypothetical protein MGG_08808 [Magnaporthe grisea 70-15], gb\|EAA51286....	109.0	[0..7]	[105..4]
gi\|40745267, gi\|... - gi\|67523713\|ref\|XP_659916.1\| hypothetical protein AN2312.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	94.0	[0..7]	[91..4]
gi\|45185664, gi\|... - gi\|45185664\|ref\|NP_983380.1\| ACL024Wp [Ashbya gossypii ATCC 10895], gi\|44981419\|gb\|AAS51204.1\| ACL02... gi\|44981419 - gi\|44981419\|gb\|AAS51204.1\| ACL024Wp [Ashbya gossypii ATCC 10895]	92.0	[0..5]	[100..6]
gi\|46436072, gi\|... - gi\|68483129\|ref\|XP_714499.1\| hypothetical protein CaO19.11089 [Candida albicans SC5314], gi\|46436072... orf19.11089 - orf19.3606 CGDID:CAL0000284 Assembly 19, Contig19-20184 (26802, 27317) CDS, translated using codon t...	92.0	[0..6]	[87..5]
gi\|125564680 - gi\|125564680\|gb\|EAZ10060.1\| hypothetical protein OsI_32364 [Oryza sativa Indica Group] OSR8_ORYSA - Hydrophobic protein OSR8 - Oryza sativa (Rice) OSR8_ORYSJ - Hydrophobic protein OSR8 OS=Oryza sativa subsp. japonica GN=OSR8 PE=3 SV=1	92.0	[0..1]	[68..1]
CE02385 - status:Confirmed UniProt:P34655 protein_id:CAA80190.1	91.0	[0..6]	[101..1]
gi\|238506933, gi... - gi\|238506933\|ref\|XP_002384668.1\| stress response RCI peptide, putative [Aspergillus flavus NRRL3357]... gi\|83776210 - gi\|83776210\|dbj\|BAE66329.1\| unnamed protein product [Aspergillus oryzae] gi\|169786003 - gi\|169786003\|ref\|XP_001827462.1\| hypothetical protein [Aspergillus oryzae RIB40]	89.0	[0..7]	[105..4]
gi\|56412215 - gi\|56412215\|gb\|AAV88602.1\| low temperature and salt responsive protein [Pennisetum glaucum]	89.0	[0..1]	[68..1]

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Predicted Domain #1

Region A:
Residues: [1-105]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNVTLSDFL LIVLSFFVPF IVVGIRRGFC TADFLINICL CALGIPGIIH AIYIVIKYPR  60
   61 TVRLDIENSP NDPLVRYTPN PEHAVSPHSG PAPPSYSSLA SNGMP

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	5.79588
Match:	PF01679.8
Description:	No description for PF01679.8 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits