YRC Public Data Repository - Protein Structure Prediction

Protein:	pex11
Organism:	Schizosaccharomyces pombe
Length:	238 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pex11.

Description	E-value	Query Range	Subject Range
gi\|59802984 - gi\|59802984\|gb\|AAX07686.1\| peroxisomal membrane protein-like protein [Magnaporthe grisea] gi\|38099174, gi\|... - gi\|39954150\|ref\|XP_364051.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA46553....	243.0	[0..4]	[237..6]
gi\|85097341 - gi\|85097341\|ref\|XP_960428.1\| hypothetical protein NCU04802 [Neurospora crassa OR74A] gi\|28921919, gi\|... - gi\|32407130\|ref\|XP_324159.1\| hypothetical protein [Neurospora crassa], gi\|28921919\|gb\|EAA31192.1\| hy...	240.0	[0..4]	[237..6]
gi\|66848298, gi\|... - gi\|70991633\|ref\|XP_750665.1\| peroxisomal biogenesis factor (PEX11) [Aspergillus fumigatus Af293], gi...	237.0	[0..4]	[237..6]
gi\|115398960, gi... - gi\|115398960\|ref\|XP_001215069.1\| hypothetical protein ATEG_05891 [Aspergillus terreus NIH2624], gi\|1...	233.0	[0..4]	[237..6]
gi\|42554079, gi\|... - gi\|46134283\|ref\|XP_389457.1\| hypothetical protein FG09281.1 [Gibberella zeae PH-1], gi\|42554079\|gb\|E...	233.0	[0..4]	[237..6]
gi\|211582386 - gi\|211582386\|emb\|CAP80567.1\| peroxin-11 Pex11-Penicillium chrysogenum [Penicillium chrysogenum Wisco... gi\|55585501 - gb\|AAV53937.1\| peroxin-11 [Penicillium chrysogenum] gi\|33326691, gi\|... - gi\|55585501\|gb\|AAV53937.1\| peroxin-11 [Penicillium chrysogenum], gi\|33326691\|gb\|AAQ08763.1\| peroxin-...	233.0	[0..4]	[237..6]
gi\|238487826, gi... - gi\|238487826\|ref\|XP_002375151.1\| peroxisomal biogenesis factor (PEX11), putative [Aspergillus flavus... gi\|83767250, gi\|... - gi\|83767250\|dbj\|BAE57389.1\| unnamed protein product [Aspergillus oryzae], gi\|191175160\|dbj\|BAG49571.... gi\|169769843 - gi\|169769843\|ref\|XP_001819391.1\| hypothetical protein [Aspergillus oryzae RIB40]	230.0	[0..4]	[237..6]
gi\|49088478, gi\|... - gi\|67522929\|ref\|XP_659525.1\| hypothetical protein AN1921.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	228.0	[0..4]	[237..6]
gi\|88177449, gi\|... - gi\|88177449\|gb\|EAQ84917.1\| hypothetical protein CHGG_08931 [Chaetomium globosum CBS 148.51], gi\|1162...	227.0	[0..4]	[237..6]
gi\|119193789, gi... - gi\|90306284\|gb\|EAS35915.1\| hypothetical protein CIMG_01269 [Coccidioides immitis RS], gi\|119193789\|r...	211.0	[0..4]	[237..6]

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Predicted Domain #1

Region A:
Residues: [1-238]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIFENPQY VHVLRMLNSM PARDKTFRAL QFVAKLLSWH LFYGGSSLST VNKWKKLESN  60
   61 ISFSRKLFSI GKVLDYICKV YFDSLKLQNP LSGNKSALPT ISFTKDVAFA GYATAELIGW 120
  121 FNKTELMPCS HSKQISTIGK QCLAVALLSS CLAGCYELQQ NSKKIKSATQ EASEKDSTSL 180
  181 QTLQKERKEI LFFALQNALD ATIPLAELDI LKVNDGFVAA AGITTSLMSV YKTWIGSY

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits