YRC Public Data Repository - Protein Structure Prediction

Protein:	mcp6
Organism:	Schizosaccharomyces pombe
Length:	327 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mcp6.

Description	E-value	Query Range	Subject Range
gi\|68388302 - gi\|68388302\|ref\|XP_696268.1\| PREDICTED: similar to slow myosin heavy chain 1 [Danio rerio]	150.0	[0..1]	[319..2108]
MYH4_PIG - Myosin-4 OS=Sus scrofa GN=MYH4 PE=2 SV=1	135.0	[0..1]	[319..1106]
gi\|11276954, gi\|... - gi\|1289514\|gb\|AAC59912.1\| slow myosin heavy chain 3, gi\|1289512\|gb\|AAC59911.1\| slow myosin heavy cha...	133.0	[0..1]	[319..1099]
MYH1 - myosin, heavy chain 1, skeletal muscle, adult h0010399 - null	132.0	[0..1]	[319..1108]
MYH4_RABIT - Myosin-4 OS=Oryctolagus cuniculus GN=MYH4 PE=1 SV=1	132.0	[0..1]	[319..1107]
gi\|9800488, gi\|1... - gi\|9800488\|gb\|AAF99315.1\|AF272034_1 fast myosin heavy chain isoform 3 [Gallus gallus], gi\|165973976\|...	132.0	[0..1]	[319..1109]

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Predicted Domain #1

Region A:
Residues: [1-327]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEYQEEASLA SAEDSTFIAS SPVQSVSEMK SIKQKSFQYF DDYEKNVSDK TIQFQKLQMT  60
   61 AKEIIDAFER DSTQRTLQIE SLESKIGEQE RDLNNEKLAS ETLREKTQLL EKENGALKVE 120
  121 NGYLYEKSRK LEEEMAHLKK KCNVYKSKFE ESSLRCKSLY SSNTKLKDSM ETMKRRMETE 180
  181 TKEMNKIKPK NDSESDRFKR NSQSLSQQSP LLDVHSPDNS NHRTMLNINN SSPIKPKKIF 240
  241 KPNEVKNRIS RLQKTFADLE NQHHSFQQIC QTLRKRLEND SSTTKQRLSK LEEIIRNRAP 300
  301 PSYSFSLNCS HTYQPVSCVE PVNHDLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.221849
Match:	2tmaA
Description:	Tropomyosin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits