YRC Public Data Repository - Protein Structure Prediction

Protein:	srx1
Organism:	Schizosaccharomyces pombe
Length:	124 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for srx1.

Description	E-value	Query Range	Subject Range
gi\|238882280 - gi\|238882280\|gb\|EEQ45918.1\| sulfiredoxin [Candida albicans WO-1] gi\|68482150, gi\|... - gi\|68482277\|ref\|XP_714896.1\| hypothetical protein CaO19.3537 [Candida albicans SC5314], gi\|68482150\|... orf19.3537, orf1... - orf19.3537 CGDID:CAL0005887 Assembly 19, Contig19-10183 (25026, 24628) CDS, reverse complemented, tr...	176.0	[0..3]	[123..2]
gi\|15030144 - gi\|15030144\|gb\|AAH11325.1\| Sulfiredoxin 1 homolog (S. cerevisiae) [Mus musculus]	176.0	[0..3]	[120..31]
gi\|55650568 - gi\|55650568\|ref\|XP_525238.1\| PREDICTED: similar to SRXN1 protein [Pan troglodytes]	175.0	[0..3]	[120..32]
SRXN1 - sulfiredoxin 1 homolog (S. cerevisiae) HGNC:16132\|Ensem... - 1 homolog (S. cerevisiae) gi\|117646504, gi... - gi\|117646504\|emb\|CAL38719.1\| hypothetical protein [synthetic construct], gi\|117645104\|emb\|CAL38018.1...	173.0	[0..3]	[120..32]
gi\|109092543 - gi\|109092543\|ref\|XP_001112394.1\| PREDICTED: similar to sulfiredoxin 1 homolog [Macaca mulatta]	171.0	[0..3]	[120..32]
CG6762-PA - This gene is referred to in FlyBase by the symbol Dmel\CG6762 (CG6762, FBgn0030876). It is a protein...	166.0	[0..2]	[121..53]

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Predicted Domain #1

Region A:
Residues: [1-124]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIHTGSNN NIVELDMSEL IRPIPPVLDM NKVNSMMETM TGKTPPASCG LTSEDLEAGE  60
   61 LPPVDVLTFK KSGKPYYFAF GGCHRLRAHD EAGRKKVRCK LVNCSPNTLR LYLGASANKF 120
  121 LDSD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	43.30103
Match:	1yzsA
Description:	Solution structure of human sulfiredoxin (srx)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
DNA binding	2.28767419294285	bayes_pls_golite062009
binding	2.22126358531565	bayes_pls_golite062009
nucleic acid binding	1.30626987701529	bayes_pls_golite062009
protein binding	0.753434614974221	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: