YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC119.18
Organism:	Schizosaccharomyces pombe
Length:	69 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC119.18.

Description	E-value	Query Range	Subject Range
gi\|39973917, gi\|... - gi\|39973917\|ref\|XP_368349.1\| hypothetical protein MG00895.4 [Magnaporthe grisea 70-15], gb\|EAA49237....	128.0	[0..1]	[69..1]
gi\|44980965, gi\|... - gi\|45185307\|ref\|NP_983024.1\| ABR078Cp [Ashbya gossypii ATCC 10895], gi\|44980965\|gb\|AAS50848.1\| ABR07... gi\|44980965 - gi\|44980965\|gb\|AAS50848.1\| ABR078Cp [Ashbya gossypii ATCC 10895]	120.0	[0..1]	[68..5]
orf19.12146, orf... - orf19.4676 CGDID:CAL0003791 Assembly 19, Contig19-10212 (219401, 219943) CDS, translated using codon... gi\|68466526, gi\|... - gi\|68466526\|ref\|XP_722745.1\| hypothetical protein CaO19.4676 [Candida albicans SC5314], gi\|68466233\|...	119.0	[0..1]	[68..96]
gi\|85094525 - gi\|85094525\|ref\|XP_959899.1\| hypothetical protein [Neurospora crassa OR74A] gi\|28921356, gi\|... - gi\|32421175\|ref\|XP_331031.1\| hypothetical protein [Neurospora crassa], gi\|28921356\|gb\|EAA30663.1\| hy...	119.0	[0..1]	[68..1]
MDM35_YEAST - Mitochondrial distribution and morphology protein 35 OS=Saccharomyces cerevisiae (strain ATCC 204508... gi\|151941493 - gi\|151941493\|gb\|EDN59856.1\| mitochondrial distribution and morphology [Saccharomyces cerevisiae YJM7... MDM35 - Mitochondrial intermembrane space protein; mutation affects mitochondrial distribution and morpholog... gi\|190409775 - gi\|190409775\|gb\|EDV13040.1\| mitochondrial distribution and morphology protein 35 [Saccharomyces cere...	115.0	[0..1]	[68..5]
gi\|49529225 - gi\|49529225\|emb\|CAG62891.1\| unnamed protein product [Candida glabrata] gi\|50295000, gi\|... - gi\|50295000\|ref\|XP_449911.1\| hypothetical protein CAGL0M13057g [Candida glabrata CBS138], gi\|4952922...	113.0	[0..1]	[68..5]
gi\|49654939 - gi\|49654939\|emb\|CAG87446.1\| DEHA2D18062p [Debaryomyces hansenii] gi\|50421443, gi\|... - gi\|50421443\|ref\|XP_459272.1\| hypothetical protein DEHA0D19591g [Debaryomyces hansenii CBS767], gi\|49...	111.0	[0..1]	[68..5]
gi\|49641895, gi\|... - gi\|50305605\|ref\|XP_452763.1\| unnamed protein product [Kluyveromyces lactis], gi\|49641895\|emb\|CAH0161... gi\|49641895 - gi\|49641895\|emb\|CAH01613.1\| KLLA0C12639p [Kluyveromyces lactis]	108.0	[0..1]	[68..5]
gi\|40804633 - gi\|40804633\|emb\|CAF05893.1\| conserved hypothetical protein [Neurospora crassa]	98.0	[0..1]	[68..1]
gi\|61864019 - gi\|61864019\|ref\|XP_603511.1\| PREDICTED: similar to p53-inducible cell-survival factor [Bos taurus]	96.0	[0..3]	[58..16]

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Predicted Domain #1

Region A:
Residues: [1-69]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSVSEECT PAKKKYDACF NDWYANKFLK GDLHNRDCDE LFAEYKSCLL KALKTKKIDP  60
   61 LLEAARKED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	41.958607
Match:	PF05254.3
Description:	No description for PF05254.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.804	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.792	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.786	N/A	N/A	a.275.1	Description not found.
View	Download	0.740	N/A	N/A	a.275.1	Description not found.
View	Download	0.733	N/A	N/A	a.251.1	Description not found.
View	Download	0.705	N/A	N/A	a.24.13	Domain of the SRP/SRP receptor G-proteins
View	Download	0.686	N/A	N/A	a.7.6	Ribosomal protein S20
View	Download	0.672	N/A	N/A	a.24.17	Group V grass pollen allergen
View	Download	0.664	N/A	N/A	a.16.1	S15/NS1 RNA-binding domain
View	Download	0.591	N/A	N/A	a.112.1	Description not found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits