YRC Public Data Repository - Protein Structure Prediction

Protein:	SPBC30D10.15
Organism:	Schizosaccharomyces pombe
Length:	516 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPBC30D10.15.

Description	E-value	Query Range	Subject Range
gi\|3511287, gi\|7... - pir\|\|T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...	196.0	[0..294]	[515..1452]
gi\|54657094 - gi\|54657094\|gb\|EAL35927.1\| DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain [Cryptosporidiu... gi\|67597591 - gi\|67597591\|ref\|XP_666157.1\| DNA-directed RNA polymerase II largest chain [Cryptosporidium hominis T...	178.0	[0..346]	[514..1677]
gi\|12642614 - gi\|12642614\|gb\|AAK00311.1\|AF315821_1 DNA-dependent RNA polymerase II largest subunit RPB1 [Monosiga ...	173.0	[0..303]	[514..1516]
gi\|4092885, gi\|7... - pir\|\|T31436 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Nosema locustae, gi\|4092885\|...	157.0	[0..386]	[515..1402]
gi\|111060144 - gi\|111060144\|gb\|EAT81264.1\| hypothetical protein SNOG_11556 [Phaeosphaeria nodorum SN15]	145.0	[0..345]	[513..1060]
gi\|156405, gi\|102468 - gi\|156405\|gb\|AAA28126.1\| RNA polymerase II, pir\|\|A34092 DNA-directed RNA polymerase (EC 2.7.7.6) II ...	142.0	[0..387]	[513..1689]
gi\|73955449 - gi\|73955449\|ref\|XP_858007.1\| PREDICTED: similar to polymerase (RNA) II (DNA directed) polypeptide A ...	140.0	[0..380]	[514..1706]

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Predicted Domain #1

Region A:
Residues: [1-209]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYPHLPCKIP GLSLIYDDES KVEKSKQLST NASSSNFVKE DQIPSNLSID NINTPQGDPI  60
   61 DKNNLNTNTE NNLPNIVNFQ NISSANSGEI KQKDNEILFS STEDINQHKE NYQDENKIDL 120
  121 LDVALANPKD CVVPSSGLLM PKEEFISNEE VGIPATNSSE KSNVKIADEI AEVTHSNSSI 180
  181 GKSSADLSSD SSSDSESNTS FSETDVEEE

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [210-329]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KAEEKSDAES MAPSTPPKTV NELPEQIYEK PEIVLQPNSL IEPLGKIIQV LKREVVVKSD  60
   61 IDDEKIVFDE KTVLCFEDRS IIGYIHETFG PVSSPYYIVR FSTEEECSAI NACMGRPVFY 120
  121

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.0
Match:	2v3mA
Description:	No description for 2v3mA was found.

Predicted Domain #3

Region A:
Residues: [330-422]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VPTMANKIDP EPLKYIKGSD ASNVYDEEIN PSEQEFSDDE AEVAAKQLKK KRKRKAKSMV  60
   61 SGNQALPGEA NFQSLNQNNV RNYPFYQTNQ GSN

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.03
Match:	1b6aA
Description:	HUMAN METHIONINE AMINOPEPTIDASE 2 COMPLEXED WITH TNP-470
Matching Structure (courtesy of the PDB):

Predicted Domain #4

Region A:
Residues: [423-516]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPAKRFTQEP PSSSLYSLSE SSINYSTQSP MYYNYNYPQP SFPPFHPIYN DSIGYYSQAN  60
   61 PQMYYANQVS APPPQGSFDP NSKFYRNSSD SYRK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits