YRC Public Data Repository - Protein Structure Prediction

Protein:	rsm27
Organism:	Schizosaccharomyces pombe
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for rsm27.

Description	E-value	Query Range	Subject Range
gi\|190406775 - gi\|190406775\|gb\|EDV10042.1\| mitochondrial ribosome small subunit component [Saccharomyces cerevisiae... gi\|151943492 - gi\|151943492\|gb\|EDN61803.1\| mitochondrial ribosomal small subunit component [Saccharomyces cerevisia... RSM27 - Mitochondrial ribosomal protein of the small subunit RT27_YEAST - Mitochondrial 37S ribosomal protein S27 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=...	129.0	[0..2]	[93..3]
gi\|44981265, gi\|... - gi\|45185547\|ref\|NP_983263.1\| ACL141Cp [Ashbya gossypii ATCC 10895], gi\|44981265\|gb\|AAS51087.1\| ACL14... gi\|44981265 - gi\|44981265\|gb\|AAS51087.1\| ACL141Cp [Ashbya gossypii ATCC 10895]	128.0	[0..2]	[93..20]
gi\|38105096, gi\|... - gi\|39942156\|ref\|XP_360615.1\| hypothetical protein MG03158.4 [Magnaporthe grisea 70-15], gb\|EAA51563....	125.0	[0..2]	[83..3]
gi\|42551236, gi\|... - gi\|46121647\|ref\|XP_385378.1\| hypothetical protein FG05202.1 [Gibberella zeae PH-1], gi\|42551236\|gb\|E...	122.0	[0..2]	[90..3]
orf19.10807, orf... - orf19.3297 CGDID:CAL0003446 Assembly 19, Contig19-10173 (13056, 12748) CDS, reverse complemented, tr... gi\|238879395 - gi\|238879395\|gb\|EEQ43033.1\| conserved hypothetical protein [Candida albicans WO-1] gi\|68475007, gi\|... - gi\|68475544\|ref\|XP_718120.1\| potential mitochondrial ribosomal protein RSM27p [Candida albicans SC53...	120.0	[0..1]	[93..7]
gi\|49643810, gi\|... - gi\|50309337\|ref\|XP_454675.1\| unnamed protein product [Kluyveromyces lactis], gi\|49643810\|emb\|CAG9976... gi\|49643810 - gi\|49643810\|emb\|CAG99762.1\| KLLA0E16127p [Kluyveromyces lactis]	110.0	[0..2]	[93..3]
gi\|49524371, gi\|... - gi\|50285279\|ref\|XP_445068.1\| unnamed protein product [Candida glabrata], gi\|49524371\|emb\|CAG57968.1\|... gi\|49524371 - gi\|49524371\|emb\|CAG57968.1\| unnamed protein product [Candida glabrata]	104.0	[0..2]	[93..3]
gi\|28973445, gi\|... - gi\|30694589\|ref\|NP_199284.2\| unknown protein [Arabidopsis thaliana], gi\|28973445\|gb\|AAO64047.1\| unkn...	102.0	[0..1]	[90..9]
gi\|32415441, gi\|... - gi\|7800876\|emb\|CAB91234.1\| conserved hypothetical protein [Neurospora crassa], gi\|32415441\|ref\|XP_32... gi\|85083775 - gi\|85083775\|ref\|XP_957184.1\| hypothetical protein NCU01761 [Neurospora crassa OR74A]	95.0	[0..2]	[63..3]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASKAILEEL NILSSKIFGT QYKSNNSRTG RKFVVQELKG AKLKSYYPAT INYRQLRTLL  60
   61 NDKTFPDSDE ELRMEIRKGR IRQGKGASKS KKK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.677781
Match:	PF08293.2
Description:	No description for PF08293.2 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.722	N/A	N/A	a.48.4	Description not found.
View	Download	0.698	N/A	N/A	a.135.1	Tetraspanin
View	Download	0.684	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.628	N/A	N/A	a.135.1	Tetraspanin
View	Download	0.582	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain
View	Download	0.554	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.538	N/A	N/A	a.52.1	Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin
View	Download	0.381	N/A	N/A	a.4.2	Methylated DNA-protein cysteine methyltransferase, C-terminal domain
View	Download	0.338	N/A	N/A	a.76.1	Iron-dependent represor protein, dimerization domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits