YRC Public Data Repository - Protein Structure Prediction

Protein:	SPAC3F10.08c
Organism:	Schizosaccharomyces pombe
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SPAC3F10.08c.

Description	E-value	Query Range	Subject Range
gi\|46125863, gi\|... - gi\|46125863\|ref\|XP_387485.1\| hypothetical protein FG07309.1 [Gibberella zeae PH-1], gi\|42554699\|gb\|E...	238.0	[0..3]	[252..18]
gi\|45187751, gi\|... - gi\|45187751\|ref\|NP_983974.1\| ADL122Cp [Ashbya gossypii ATCC 10895], gi\|44982512\|gb\|AAS51798.1\| ADL12... gi\|44982512 - gi\|44982512\|gb\|AAS51798.1\| ADL122Cp [Ashbya gossypii ATCC 10895]	229.0	[0..6]	[232..11]
gi\|40745247, gi\|... - gi\|67523673\|ref\|XP_659896.1\| hypothetical protein AN2292.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	225.0	[0..5]	[252..32]
gi\|190406241 - gi\|190406241\|gb\|EDV09508.1\| protein FAF1 [Saccharomyces cerevisiae RM11-1a] gi\|207344278 - gi\|207344278\|gb\|EDZ71476.1\| YIL019Wp-like protein [Saccharomyces cerevisiae AWRI1631] FAF1_YEAST - Protein FAF1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FAF1 PE=1 SV=1 FAF1 - Protein required for pre-rRNA processing and 40S ribosomal subunit assembly	210.0	[0..6]	[232..12]
orf19.1250, orf1... - orf19.1250 CGDID:CAL0002944 Assembly 19, Contig19-10104 (62561, 63547) CDS, translated using codon t... gi\|46438172, gi\|... - gi\|68478895\|ref\|XP_716502.1\| hypothetical protein CaO19.8834 [Candida albicans SC5314], gi\|68478792\|...	203.0	[0..1]	[225..1]
gi\|85081139 - gi\|85081139\|ref\|XP_956664.1\| hypothetical protein NCU00151 [Neurospora crassa OR74A] gi\|32403248, gi\|... - gi\|32403248\|ref\|XP_322237.1\| hypothetical protein [Neurospora crassa], gi\|28917737\|gb\|EAA27428.1\| pr...	198.0	[0..4]	[257..62]
gi\|88183521, gi\|... - gi\|88183521\|gb\|EAQ90989.1\| hypothetical protein CHGG_02924 [Chaetomium globosum CBS 148.51], gi\|1162...	176.0	[0..4]	[252..22]
gi\|50290751, gi\|... - gi\|50290751\|ref\|XP_447808.1\| unnamed protein product [Candida glabrata], gi\|49527119\|emb\|CAG60757.1\|... gi\|49527119 - gi\|49527119\|emb\|CAG60757.1\| unnamed protein product [Candida glabrata]	156.0	[0..6]	[232..12]
gi\|66851651, gi\|... - gi\|70998586\|ref\|XP_754015.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668516... gi\|159126251 - gi\|159126251\|gb\|EDP51367.1\| conserved hypothetical protein [Aspergillus fumigatus A1163]	142.0	[0..5]	[257..33]

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Predicted Domain #1

Region A:
Residues: [1-128]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSENALLALQ RHFEDQFGHI EGLQPVSAKP SETAFNSDAS EKEQSPTTSN EEEDAISDME  60
   61 DKEDVSFGSK ILRVSHQEVE KPTLSATVGR VSFLKKMPKL EDEEEILAKK REEQKLRKRS 120
  121 RQNDDGSD

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [129-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDEVENLKND LELQKLLRES HLLHEATSRT GQVQLVAEGK IRHKVVQQHI AQLGGKKETE  60
   61 KMPMAARRGM KKKQKHIEKV IENEARESGT VLAKKRKERK QFKKGFRPVT FSAPGKLVGG 120
  121 TLLLPKSMIP K

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.401	0.886	rRNA processing	d.79.3	L30e-like
View	Download	0.681	0.886	rRNA processing	a.26.1	4-helical cytokines
View	Download	0.373	0.886	rRNA processing	a.45.1	Glutathione S-transferase (GST), C-terminal domain
View	Download	0.291	0.886	rRNA processing	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.266	0.886	rRNA processing	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits