YRC Public Data Repository - Protein Structure Prediction

Protein:	mug113
Organism:	Schizosaccharomyces pombe
Length:	326 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for mug113.

Description	E-value	Query Range	Subject Range
gi\|49091996, gi\|... - gi\|67525729\|ref\|XP_660926.1\| hypothetical protein AN3322.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	251.0	[0..105]	[321..244]
gi\|39977793, gi\|... - gi\|39977793\|ref\|XP_370284.1\| hypothetical protein MGG_06781 [Magnaporthe grisea 70-15], gb\|EAA55124....	234.0	[0..142]	[320..243]
gi\|42546728, gi\|... - gi\|46110335\|ref\|XP_382225.1\| hypothetical protein FG02049.1 [Gibberella zeae PH-1], gi\|42546728\|gb\|E...	211.0	[0..142]	[320..190]
gi\|28923124, gi\|... - gi\|32412448\|ref\|XP_326704.1\| predicted protein [Neurospora crassa], gi\|28923124\|gb\|EAA32341.1\| hypot... gi\|85103690 - gi\|85103690\|ref\|XP_961577.1\| hypothetical protein NCU01211 [Neurospora crassa OR74A]	185.0	[0..123]	[320..175]
gi\|88178701, gi\|... - gi\|88178701\|gb\|EAQ86169.1\| hypothetical protein CHGG_07422 [Chaetomium globosum CBS 148.51], gi\|1161...	184.0	[0..151]	[320..342]
gi\|71022109, gi\|... - gi\|71022109\|ref\|XP_761285.1\| hypothetical protein UM05138.1 [Ustilago maydis 521], ref\|XP_402753.1\| ...	173.0	[0..158]	[300..376]
gi\|83772262 - gi\|83772262\|dbj\|BAE62392.1\| unnamed protein product [Aspergillus oryzae] gi\|238495388, gi... - gi\|238495388\|ref\|XP_002378930.1\| conserved hypothetical protein [Aspergillus flavus NRRL3357], gi\|22... gi\|169778119 - gi\|169778119\|ref\|XP_001823525.1\| hypothetical protein [Aspergillus oryzae RIB40]	168.0	[0..142]	[322..154]
gi\|28394456 - gi\|28394456\|gb\|AAM08683.1\| 25D9-10 [Aspergillus fumigatus]	165.0	[0..136]	[322..458]
gi\|66853686, gi\|... - gi\|71002734\|ref\|XP_756048.1\| conserved hypothetical protein [Aspergillus fumigatus Af293], gi\|668536...	164.0	[0..136]	[322..450]

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Predicted Domain #1

Region A:
Residues: [1-143]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKMPNTLHSV SISTDFPSPN VESEAADVNE YSSTSKFETL GNQSSTNLGF SNSLQDKWDC  60
   61 WKRDLWSIWW SLSRKATRFY RWLSRSLKWR PVTYETVYPQ TYETQMSEPR EVTTIVKDLN 120
  121 NGDSFVLNVT EPVDPEFLRA NIP

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.452	a.36.1	Signal peptide-binding domain
View	Download	0.440	a.74.1	Cyclin-like
View	Download	0.490	d.110.3	PYP-like sensor domain (PAS domain)
View	Download	0.475	f.36.1	Neurotransmitter-gated ion-channel pransmembrane pore
View	Download	0.841	a.121.1	Tetracyclin repressor-like, C-terminal domain

Predicted Domain #2

Region A:
Residues: [144-326]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PVHRKHLPPR LSLVASPGTI PTRGVVVLED WINPLLSERC KLLLQSELCN QDSYDCPGYI  60
   61 CVYRFEQKNN PSVVLGDSTL IQISRVSDLQ RHLREYPKNC AFSRSVLEIF PDPGKTSKPC 120
  121 QVSFKVERLV HKELNEYLSW MQPFTCDSCG SLHENWLQID SKQWDQIRGV ILRWVEYSRV 180
  181 IYA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	27.080922
Match:	PF08582.1
Description:	No description for PF08582.1 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits