YRC Public Data Repository - Protein Structure Prediction

Protein:	pdt1
Organism:	Schizosaccharomyces pombe
Length:	521 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for pdt1.

Description	E-value	Query Range	Subject Range
gi\|40287458 - gi\|40287458\|gb\|AAR83912.1\| natural resistance-associated macrophage protein [Pagrus major]	449.0	[0..10]	[519..8]
gi\|82407251 - gi\|82407251\|gb\|ABB73023.1\| natural resistance-associated macrophage protein [Scophthalmus maximus]	446.0	[0..16]	[519..14]
gi\|73996656 - gi\|73996656\|ref\|XP_543669.2\| PREDICTED: similar to solute carrier family 11 (proton-coupled divalent...	445.0	[0..9]	[516..208]
gi\|38147270 - gi\|38147270\|gb\|AAG31225.2\| natural resistance-associated macrophage protein [Morone saxatilis]	443.0	[0..16]	[519..14]
gi\|4433389 - gi\|4433389\|gb\|AAD20721.1\| natural resistance associated macrophage protein-alpha [Oncorhynchus mykis...	442.0	[0..20]	[520..21]
gi\|62549192 - gi\|62549192\|gb\|AAX86980.1\| natural resistance-associated macrophage protein [Paralichthys olivaceus]	436.0	[0..10]	[519..8]
gi\|27529495, gi\|... - gi\|27529495\|emb\|CAD43053.1\| solute carrier family 11 protein [Takifugu rubripes], gi\|27529491\|emb\|CA...	431.0	[0..10]	[519..8]

Back

Predicted Domain #1

Region A:
Residues: [1-521]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSQSYYMND LDDLRSLESS TLNKKDTAIN ELNPEQNDTR RSTDLLLEDK YGIQTGFSKY  60
   61 WKKCTYGIRE YCKFIGPGFL IAVAYIDPGN YSTDLDAGSR FQYKLLFIVF LSNLFAVYLQ 120
  121 SLCIRLGSVT GMDLARNCRE HYNRYICWSF YVLAEIAIIA TDIAEVIGTA VALKILMHIP 180
  181 LVAGVVITIL DVLLVLIAWR PEGSMLSVRI FETAVALLVL VVAISFAVVL GRVHIGGAGT 240
  241 VFKGFLPSST VFSREGLYSS IGILGATVMP HSLFLGSGLV QTRLRDLDVR RGNYTPVGDC 300
  301 SDYRPTHETI KHSLTYSIVE VALSLFTFAL FTNSSILIVA GAVFYNTSGA DTSDLFSIYD 360
  361 LLKEYVSISC GRLFAVALLF SGMSAGYVCT IAGQIVSEGY INWNLRPWLR RVITRAIAII 420
  421 PCLVVSAAVG QSGLNQVLNA SQVCLSILLP FLTFPLVMFT CSRKVMRVVS DSTNEETGQL 480
  481 IRETHDYSLG WTMTIVTWAI WLFLTALNLL LIVWLGMGVS F

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.1
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits