| Protein: | nab3 |
| Organism: | Schizosaccharomyces pombe |
| Length: | 738 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for nab3.
| Description | E-value | Query Range |
Subject Range |
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252.0 | [0..308] | [736..128] |
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249.0 | [0..308] | [736..137] |
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247.0 | [0..308] | [736..137] |
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246.0 | [0..308] | [736..137] |
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245.0 | [0..308] | [736..137] |
|
Region A: Residues: [1-114] |
1 11 21 31 41 51
| | | | | |
1 MSSSSKDSSF QVETPVQNIL ETSTNSELQD QVSSPYEPDY NSPVKQAAAS ISALQTQDDT 60
61 LFNNVDERTL ENKDGNKSDD ANFDQVSGIP SGSLEIPILN SATSNIRLTP SDTY
|
| Detection Method: |  |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
| MCM Score |
SCOP Match |
SCOP Description | ||
| View | Download | 0.399 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.395 | a.118.8 | TPR-like |
| View | Download | 0.387 | a.118.8 | TPR-like |
| View | Download | 0.371 | d.150.1 | 4'-phosphopantetheinyl transferase |
| View | Download | 0.350 | a.24.9 | alpha-catenin/vinculin |
| View | Download | 0.315 | a.24.18 | Description not found. |
| View | Download | 0.304 | a.118.8 | TPR-like |
| View | Download | 0.274 | a.118.8 | TPR-like |
| View | Download | 0.208 | a.39.2 | Insect pheromon/odorant-binding proteins |
| View | Download | 0.207 | a.7.6 | Ribosomal protein S20 |
|
Region A: Residues: [115-237] |
1 11 21 31 41 51
| | | | | |
1 NNIPVSDTNN EEISKNIYGA PILESTSSDF QSKDSLSTTQ PSVSGGNGST SQSPPSLDVE 60
61 QNKPFSISNE PVEQETENSS TKDLQVYDFQ TASEHLPEQS LQNTTYYDPS KTYSSVNFEE 120
121 IEY
|
| Detection Method: | |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
| MCM Score |
GO Score |
GO Term |
SCOP Match |
SCOP Description | ||
| View | Download | 0.334 | N/A | N/A | a.4.6 | C-terminal effector domain of the bipartite response regulators |
|
Region A: Residues: [238-455] |
1 11 21 31 41 51
| | | | | |
1 GKSHEKLDLP YRTTDFIPYS KDLSTSPEAH RTSIYSYSAN LPNYYNEHNE LHEHHNPQTP 60
61 SSPESAYSPE NLQLNHEAQN VEYLGNNAAE KSLQMNLEDE QRFQQFLKDE ESIMSNWYPG 120
121 QFPSASRLFL GHLNTKSLSK RNLWKVFKIY GPLAQIVLKA NYGFVQFFTN EDCARALNAE 180
181 QGNFVRGQKL HLEISKIQKK YQNQIENMKK GSHVTKSN
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| Detection Method: | |
| Confidence: | 22.045757 |
| Match: | 1cvjA |
| Description: | Poly(A)-binding protein |
Matching Structure (courtesy of the PDB): |
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Region A: Residues: [456-574] |
1 11 21 31 41 51
| | | | | |
1 QYSEMIGNLP YPTSSRKRTR SPLMSKGKSY DRKGSISMSK NFSPDCEILV TEDCPKEFVW 60
61 GVEKVFQERR LNIHTTCLYR DSNLQVIIKS CIINSVKSII LINAGLAHLG KVSVQVFKD
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| Detection Method: | |
| Confidence: | 25.30103 |
| Match: | 1po6A |
| Description: | Crystal Structure of UP1 Complexed With d(TAGG(6MI)TTAGGG): A Human Telomeric Repeat Containing 6-methyl-8-(2-deoxy-beta-ribofuranosyl)isoxanthopteridine (6MI) |
Matching Structure (courtesy of the PDB): |
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|
Region A: Residues: [575-738] |
1 11 21 31 41 51
| | | | | |
1 GSSDSEVRCD EYAAVDVMVA ASIVHHAKTS LMHSAASSTP SYNGERIVPD VPSPCISTNP 60
61 NLPALVGSLD SVNLHHLLGF IQNTYSTTSY IPTRVSFNPN DTGGSFGTIT SQSQFVVNEM 120
121 PKNYARDNYE ALHSQESRQR SSVAGNKQLQ KILEQLAELK QPDF
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| Detection Method: | |
| Confidence: | 5.0 |
| Match: | 1m2vB |
| Description: | Sec24 |
Matching Structure (courtesy of the PDB): |
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